Fixed typo in BioNetGen Comparison model

Author: fabriciocravo

docs/example_models/journal_models/BioNetGen_Comparison.py

@@ -3,20 +3,21 @@
 R0, L0, A0, kon, koff, kAon, kAoff, kAp, kAdp = ModelParameters(100, 500, 100, 0.01,
                                                                 0.1, 0.01, 0.1, 0.01, 0.1)
 
-r_link = BaseSpecies()
+r_link, C = BaseSpecies()
 r_link.r_0, r_link.r_1
 R, L, A = New(r_link)
 
 R.r_0 + L.r_0 >> R.r_1 + L.r_1 [kon, koff]
 
 R.a_0 + A.r_0 >> R.a_1 + A.r_1 [kAon, kAoff]
 
-(R.a_1+ L + A.n_p).r_1 >> (R.a_1 + L + A.y_p).r_1 [lambda R: kAp*R**3]
+C.assing(A.r_1.n_p - R.a_1.r_0)
+C + A.n_p.r_1 >> C + A.y_p.r_1 [lambda c: kAp*c]
 
 A.y_p >> A.n_p [kAdp]
 
 R(R0), L(L0), A(A0)
-S = Simulation(R, L, A)
+S = Simulation(R | L | A | C)
 print(S.compile())
 
 

for_local_use.py

@@ -3,6 +3,12 @@
 
 if __name__ == '__main__':
 
-    pass
+    Spe_Dict = {'E_1':None, 'Eb_1':None, 'D_2': None}
 
+    L = BaseSpecies(list(Spe_Dict.keys()))
+
+    for spe in L:
+        Spe_Dict[spe.get_name()] = spe
+
+    print(Spe_Dict)