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rice-trait-ontology_withcropname.obo
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format-version: 1.2
default-namespace: CO_320_rice
ontology: co_320
[Term]
id: CO_320:0000004
name: rice grain length trait
def: "Length of whole grain including the hull, defined as the distance from the base of the lowermost sterile lemma to the tip (apiculus) of the fertile lemma or palea." [CO:curators]
synonym: "GrLng" EXACT []
property_value: exactMatch TO:0000734
is_a: TO:0000734 ! grain length
[Term]
id: CO_320:0000005
name: rice grain width trait
def: "Width of whole grain including the hull, defined as the distance across the fertile lemma and the palea at the widest point." [CO:curators]
synonym: "GrWdt" EXACT []
property_value: exactMatch TO:0000402
is_a: TO:0000402 ! dehulled grain width
[Term]
id: CO_320:0000006
name: rice leaf blade color trait
def: "Color of the leaf lamina/blade." [CO:curators]
synonym: "LfBladCol" EXACT []
property_value: exactMatch TO:0000299
is_a: TO:0000299 ! leaf lamina color
[Term]
id: CO_320:0000009
name: rice panicle number per plant trait
def: "Number of panicles per plant." [CO:curators]
synonym: "PanNo" EXACT []
property_value: exactMatch TO:0000152
is_a: TO:0000152 ! panicle number
[Term]
id: CO_320:0000011
name: rice leaf length trait
def: "Length of penultimate leaf blade." [CO:curators]
synonym: "LfLng" EXACT []
property_value: exactMatch TO:0000135
is_a: TO:0000135 ! leaf length
[Term]
id: CO_320:0000013
name: rice leaf blade pubescence trait
def: "Describes the pubescence, i.e. the hairiness, of the surface of the penultimate leaf blade." [CO:curators]
synonym: "LfBladPub" EXACT []
property_value: exactMatch TO:0000055
is_a: TO:0000055 ! leaf lamina pubescence
[Term]
id: CO_320:0000014
name: rice leaf angle trait
def: "Position of the tip of the penultimate leaf blade relative to its base." [CO:curators]
synonym: "LfAng" EXACT []
property_value: exactMatch TO:0000206
is_a: TO:0000206 ! leaf angle
[Term]
id: CO_320:0000015
name: rice awning trait
def: "Presence, distribution and length of awns." [CO:curators]
synonym: "AwType" EXACT []
property_value: broadMatch TO:0002718
is_a: TO:0002718 ! awn morphology trait
[Term]
id: CO_320:0000016
name: rice culm internode anthocyanin trait
def: "Purplish markings, if any, on internodes on the culm/stem attributable to anthocyanin." [CO:curators]
synonym: "CulmINodAnth" EXACT []
property_value: broadMatch TO:0000071
is_a: TO:0000071 ! anthocyanin content
[Term]
id: CO_320:0000017
name: rice flag leaf angle trait
def: "The angle of attachment between the flag leaf blade and the main panicle axis." [CO:curators]
synonym: "FlgLfAng" EXACT []
property_value: exactMatch TO:0000124
is_a: TO:0000124 ! flag leaf angle
[Term]
id: CO_320:0000018
name: rice panicle type trait
def: "Panicle type, defined by the orientation of primary branches." [CO:curators]
synonym: "PanTyp" EXACT []
property_value: exactMatch TO:0000089
is_a: TO:0000089 ! panicle inflorescence type
[Term]
id: CO_320:0000020
name: rice grain thickness trait
def: "Thickness of grain with hull." [CO:curators]
synonym: "GrThk" EXACT []
property_value: exactMatch TO:0000399
is_a: TO:0000399 ! grain thickness
[Term]
id: CO_320:0000021
name: rice leaf width trait
def: "Width of penultimate leaf blade." [CO:curators]
synonym: "LfWdt" EXACT []
property_value: exactMatch TO:0000370
is_a: TO:0000370 ! leaf width
[Term]
id: CO_320:0000023
name: rice basal leaf sheath color trait
def: "Colour of the outer surface of the basal leaf sheath." [CO:curators]
synonym: "BLSCol" EXACT []
property_value: exactMatch TO:0000367
is_a: TO:0000367 ! basal leaf sheath color
[Term]
id: CO_320:0000025
name: rice ligule length trait
def: "Length of ligule, defined as distance from the base of the collar to the tip of the ligule." [CO:curators]
synonym: "LigLng" EXACT []
property_value: exactMatch TO:0000024
is_a: TO:0000024 ! ligule length
[Term]
id: CO_320:0000026
name: rice ligule color trait
def: "Color of the ligule." [CO:curators]
synonym: "LigCol" EXACT []
property_value: exactMatch TO:0000197
is_a: TO:0000197 ! ligule color
[Term]
id: CO_320:0000027
name: rice ligule shape trait
def: "Shape of the ligule." [CO:curators]
synonym: "LigShp" EXACT []
property_value: exactMatch TO:0000335
is_a: TO:0000335 ! ligule shape
[Term]
id: CO_320:0000028
name: rice collar color trait
def: "Colour of the leaf collar." [CO:curators]
synonym: "CollCol" EXACT []
property_value: exactMatch TO:0000364
is_a: TO:0000364 ! leaf collar color
[Term]
id: CO_320:0000029
name: rice auricle color trait
def: "Color of the auricle." [CO:curators]
synonym: "AurCol" EXACT []
property_value: exactMatch TO:0000294
is_a: TO:0000294 ! leaf sheath auricle color
[Term]
id: CO_320:0000030
name: rice culm length trait
def: "Length of the main culm (stem), defined as the distance from the soil surface to the base of the panicle." [CO:curators]
synonym: "CulmLng" EXACT []
property_value: exactMatch TO:0000576
is_a: TO:0000576 ! stem length
[Term]
id: CO_320:0000031
name: rice culm angle trait
def: "Angle of inclination of the base of the main culm from vertical." [CO:curators]
synonym: "CulmAng" EXACT []
property_value: exactMatch TO:0000427
is_a: TO:0000427 ! culm angle
[Term]
id: CO_320:0000033
name: rice panicle length trait
def: "Length of panicle defined as the distance from the base to the tip of the panicle when the main axis of the panicle is held straight." [CO:curators]
synonym: "PanLng" EXACT []
property_value: exactMatch TO:0000040
is_a: TO:0000040 ! panicle length
[Term]
id: CO_320:0000034
name: rice secondary panicle branching trait
def: "The abundance and distribution of spikelets borne on secondary branches of the panicle." [CO:curators]
synonym: "Pan2ndBr" EXACT []
property_value: exactMatch TO:0000142
is_a: TO:0000142 ! secondary branching of inflorescence
[Term]
id: CO_320:0000035
name: rice panicle axis attitude trait
def: "The attitude of the main axis of the panicle, which ranges from straight upright to droopy." [CO:curators]
synonym: "PanAxAtt" EXACT []
property_value: exactMatch TO:0000342
is_a: TO:0000342 ! panicle axis angle
[Term]
id: CO_320:0000036
name: rice awn color trait
def: "Colour of the awns, if present." [CO:curators]
synonym: "AwCol" EXACT []
property_value: exactMatch TO:0000141
is_a: TO:0000141 ! awn color
[Term]
id: CO_320:0000037
name: rice apiculus color trait
def: "Color of the apiculus of the lemma." [CO:curators]
synonym: "ApCol" EXACT []
property_value: exactMatch TO:0000140
is_a: TO:0000140 ! lemma apiculus color
[Term]
id: CO_320:0000038
name: rice stigma color trait
def: "Color of stigma." [CO:curators]
synonym: "StgmCol" EXACT []
property_value: exactMatch TO:0000185
is_a: TO:0000185 ! stigma color
[Term]
id: CO_320:0000039
name: rice lemma and palea color trait
def: "Colour of the lemma and palea." [CO:curators]
synonym: "LmPCol" EXACT []
property_value: exactMatch TO:0000264
is_a: TO:0000264 ! lemma and palea color
[Term]
id: CO_320:0000040
name: rice lemma and palea pubescence trait
def: "Describes the presence, distribution and type of hairs on the lemma and palea." [CO:curators]
synonym: "LmPPub" EXACT []
property_value: exactMatch TO:0000417
is_a: TO:0000417 ! lemma and palea pubescence
[Term]
id: CO_320:0000041
name: rice sterile lemma color trait
def: "Colour of the sterile lemmas." [CO:curators]
synonym: "StrLmCol" EXACT []
property_value: exactMatch TO:0000400
is_a: TO:0000400 ! sterile lemma color
[Term]
id: CO_320:0000042
name: rice sterile lemma length trait
def: "Length of sterile lemmas." [CO:curators]
synonym: "StrLmLng" EXACT []
property_value: exactMatch TO:0000240
is_a: TO:0000240 ! sterile lemma length
[Term]
id: CO_320:0000055
name: rice alkali injury trait
def: "The extent to which plant growth is adversely affected in alkaline soils." [CO:curators]
synonym: "AlkInj" EXACT []
property_value: exactMatch TO:0000481
is_a: TO:0000481 ! alkali sensitivity
[Term]
id: CO_320:0000057
name: rice cold tolerance trait
def: "Ability of a plant to grow and develop normally under cold conditions. Key periods of sensitivity are during seedling growth, tillering, and flowering." [CO:curators]
synonym: "ColdSens" EXACT []
property_value: exactMatch TO:0000303
is_a: TO:0000303 ! low temperature stress response
[Term]
id: CO_320:0000058
name: rice drought recovery trait
def: "The extent to which plants recover when soaked with water after exposure to drought. The extent of recovery depends strongly on the severity of drought." [CO:curators]
synonym: "DhtRecov" EXACT []
property_value: exactMatch TO:0000458
is_a: TO:0000458 ! drought recovery
[Term]
id: CO_320:0000060
name: rice drought injury trait
def: "The extent to which plant growth is adversely affected by drought. Leaf rolling precedes leaf drying during drought. Response to drought is highly responsive to crop phenology, plant growth prior to stress, and the timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks during the vegetative stage to cause marked differences in response and at least 7 rainless days during the reproductive stage to cause severe drought injury. Repeated ratings are recommended through progress of the drought. Record the stage of plant growth when the stress occurred and the number of stress days." [CO:curators]
synonym: "DhtInj" EXACT []
property_value: exactMatch TO:0000188
is_a: TO:0000188 ! drought sensitivity
[Term]
id: CO_320:0000061
name: rice stem elongation trait
def: "The ability of the stem to elongate as flood water rises and thus to keep the topmost leaves above water level." [CO:curators]
synonym: "StmElong" EXACT []
property_value: exactMatch TO:0006036
is_a: TO:0006036 ! stem elongation
[Term]
id: CO_320:0000062
name: rice heat injury trait
def: "The extent to which plant growth is adversely affected by high temperature. The key period of sensitivity is during flowering." [CO:curators]
synonym: "HeatSens" EXACT []
property_value: exactMatch TO:0000259
is_a: TO:0000259 ! high temperature stress response
[Term]
id: CO_320:0000063
name: rice iron toxicity injury trait
def: "The extent to which plant growth is adversely affected by high (toxic) iron content in the growing medium." [CO:curators]
synonym: "IronInj" EXACT []
property_value: exactMatch TO:0000224
is_a: TO:0000224 ! iron sensitivity
[Term]
id: CO_320:0000064
name: rice kneeing ability trait
def: "The ability of a stem, after it has fallen flat e.g. after floodwater recedes, to start growing upright from a young node (the knee) and bear panicles, typically an ability expressed by deepwater varieties (applicable only in conditions where culms have fallen flat)." [CO:curators]
synonym: "KneeAb" EXACT []
property_value: exactMatch TO:0000337
is_a: TO:0000337 ! kneeing ability
[Term]
id: CO_320:0000065
name: rice phosphorus deficiency damage trait
def: "The extent to which plant growth is adversely affected by a deficiency of phosphorus in the growing medium." [CO:curators]
synonym: "PDef" EXACT []
property_value: exactMatch TO:0000102
is_a: TO:0000102 ! phosphorus sensitivity
[Term]
id: CO_320:0000066
name: rice salt injury trait
def: "The extent to which plant growth is adversely affected in soils or other growth medium with high salt content." [CO:curators]
synonym: "SaltInj" EXACT []
property_value: exactMatch TO:0000429
is_a: TO:0000429 ! salt sensitivity
[Term]
id: CO_320:0000067
name: rice submergence tolerance trait
def: "The ability of plants to survive a period of submergence." [CO:curators]
synonym: "SubTol" EXACT []
property_value: exactMatch TO:0000524
is_a: TO:0000524 ! submergence tolerance
[Term]
id: CO_320:0000069
name: rice zinc deficiency injury trait
def: "The extent to which plant growth is adversely affected by a deficiency of zinc in the growing medium." [CO:curators]
synonym: "ZnDefInj" EXACT []
property_value: exactMatch TO:0000351
is_a: TO:0000351 ! zinc sensitivity
[Term]
id: CO_320:0000073
name: rice grain yield trait
def: "Amount of grain (weight) produced per area." [CO:curators]
synonym: "GY" EXACT []
property_value: exactMatch TO:0000396
is_a: TO:0000396 ! grain yield
[Term]
id: CO_320:0000074
name: rice panicle exsertion trait
def: "Extent to which the panicle is exserted above (i.e. protrudes from), as opposed to being enclosed within, the flag leaf sheath." [CO:curators]
synonym: "PanExs" EXACT []
property_value: exactMatch TO:0000165
is_a: TO:0000165 ! panicle inflorescence exsertion
[Term]
id: CO_320:0000075
name: rice phenotypic acceptability trait
def: "An overall assessment of phenotypic acceptability of the grains for the target breeding objectives, locations and markets." [CO:curators]
synonym: "PhenAcc" EXACT []
property_value: exactMatch TO:0000322
is_a: TO:0000322 ! phenotypic acceptability
[Term]
id: CO_320:0000076
name: rice plant height trait
def: "Plant height defined as distance from the soil surface to the highest point of the plant (panicle or flag leaf) excluding awns." [CO:curators]
synonym: "PlntHt" EXACT []
property_value: exactMatch TO:0000207
is_a: TO:0000207 ! plant height
[Term]
id: CO_320:0000077
name: rice vigor trait
def: "An overall description of the vigour of plant growth, combining several components such as number of tillers, plant height, number of leaves, canopy density." [CO:curators]
synonym: "PlntVg" EXACT []
is_a: TO:0000250 ! plant vigor trait
[Term]
id: CO_320:0000078
name: rice panicle threshability trait
def: "Describes the ease with which grains are removed from the panicle during threshing." [CO:curators]
synonym: "PanThr" EXACT []
property_value: exactMatch TO:0000406
is_a: TO:0000406 ! panicle threshability
[Term]
id: CO_320:0000079
name: rice tiller number per plant trait
def: "Total number of reproductive and non-reproductive tillers arising from the base of each plant." [CO:curators]
synonym: "TillNo" EXACT []
property_value: exactMatch TO:0000346
is_a: TO:0000346 ! tiller number
[Term]
id: CO_320:0000080
name: rice lodging incidence trait
def: "Describes the tendency of plants to lodge (fall flat)." [CO:curators]
synonym: "LodInc" EXACT []
property_value: exactMatch TO:0000068
is_a: TO:0000068 ! lodging incidence
[Term]
id: CO_320:0000082
name: rice maturity trait
def: "Time elapsed from effective seeding date to grain ripening defined as when 80-85% of grains on panicle are mature (growth stage 9)." [CO:curators]
synonym: "TMat" EXACT []
property_value: exactMatch TO:0000469
is_a: TO:0000469 ! days to maturity
[Term]
id: CO_320:0000084
name: rice culm strength trait
def: "The stiffness of the culm and its resilience to being bent over." [CO:curators]
synonym: "CulmStr" EXACT []
property_value: exactMatch TO:0000051
is_a: TO:0000051 ! stem strength
[Term]
id: CO_320:0000085
name: rice leaf senescence trait
def: "Describes how soon leaves senesce." [CO:curators]
synonym: "LfSen" EXACT []
property_value: exactMatch TO:0000249
is_a: TO:0000249 ! leaf senescence trait
[Term]
id: CO_320:0000086
name: rice seed germination trait
def: "The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis." [CO:curators]
synonym: "SdGerm" EXACT []
property_value: exactMatch TO:0000202
is_a: TO:0000202 ! germination ratio
[Term]
id: CO_320:0000088
name: rice time to flowering (from sowing) trait
def: "Time elapsed from date of sowing to flowering stage." [CO:curators]
synonym: "DFlwS" EXACT []
is_a: TO:0000344 ! days to flowering trait
[Term]
id: CO_320:0000090
name: rice spikelet fertility trait
def: "The proportion of spikelets on a harvested panicle that contain filled grains." [CO:curators]
synonym: "SpkFer" EXACT []
property_value: exactMatch TO:0000180
is_a: TO:0000180 ! spikelet fertility
[Term]
id: CO_320:0000091
name: rice male sterility group trait
def: "A classification of male sterility according to the type or cause of sterility." [CO:curators]
synonym: "MaleSterGp" EXACT []
property_value: broadMatch TO:0000437
is_a: TO:0000437 ! male sterility
[Term]
id: CO_320:0000092
name: rice abortion pattern trait
def: "Describes the stage at which pollen grains abort in male sterile lines." [CO:curators]
synonym: "AP" EXACT []
is_a: TO:0000053 ! pollen sterility
[Term]
id: CO_320:0000093
name: rice stigma exsertion trait
def: "Describes the tendency of stigmas to be exserted on one or both sides of the florets." [CO:curators]
synonym: "StgExers" EXACT []
property_value: exactMatch TO:0000044
is_a: TO:0000044 ! stigma exsertion
[Term]
id: CO_320:0000094
name: rice glume opening trait
def: "The extent to which the glumes (i.e. the lemma and palea) of a floret open during blooming." [CO:curators]
synonym: "GlOp" EXACT []
property_value: exactMatch TO:0000474
is_a: TO:0000474 ! glume opening
[Term]
id: CO_320:0000098
name: rice fertility restoration trait
def: "This is a compound trait used for F1 hybrids combining the proportion of fertile spikelets at maturity with the proportion of fertile pollen at anthesis." [CO:curators]
synonym: "FertRest" EXACT []
property_value: exactMatch TO:0000308
is_a: TO:0000308 ! male fertility restoration trait
[Term]
id: CO_320:0000100
name: rice grain weight trait
def: "The weight of a whole grain including the hull." [CO:curators]
synonym: "GrnWt" EXACT []
property_value: exactMatch TO:0000181
is_a: TO:0000919 ! grain weight
[Term]
id: CO_320:0000102
name: rice amylose content trait
def: "Amylose content of milled rice as a proportion or percentage of the total amount of rice." [CO:curators]
synonym: "AmyCt" EXACT []
property_value: exactMatch TO:0000196
is_a: TO:0000196 ! amylose content
[Term]
id: CO_320:0000103
name: rice scent trait
def: "Describes the aroma of rice grains." [CO:curators]
synonym: "Sct" EXACT []
property_value: exactMatch TO:0000087
is_a: TO:0000087 ! grain aroma trait
[Term]
id: CO_320:0000104
name: rice chalkiness of endosperm trait
def: "Describes the extent to which milled (polished, white) rice appears to be a chalky white colour as opposed to translucent white. The chalky appearance arises from the incomplete development of starch grains in the endosperm, which leaves tiny air pockets between starch granules and results in weak grains." [CO:curators]
synonym: "Clk" EXACT []
property_value: exactMatch TO:0000266
is_a: TO:0000266 ! chalky endosperm
[Term]
id: CO_320:0000105
name: rice grain elongation trait
def: "The extend to which grains elongate during cooking. High elongation is typical of basmati types of rice." [CO:curators]
synonym: "GrElong" EXACT []
property_value: exactMatch TO:0000377
is_a: TO:0000377 ! cooked grain elongation
[Term]
id: CO_320:0000106
name: rice gel consistency trait
def: "Describes the consistency of a rice gel formed by grinding, chemically treating, boiling, and cooling a sample of grains. This measures the tendency of cooked rice to harden on cooling, a function of carbohydrate composition." [CO:curators]
synonym: "GelC" EXACT []
property_value: exactMatch TO:0000211
is_a: TO:0000211 ! starch gel consistency
[Term]
id: CO_320:0000107
name: rice gelatinization temperature trait
def: "Temperature at which the starch in endosperm gelatinizes, one of the key indicators of cooking quality." [CO:curators]
synonym: "GelTemp" EXACT []
property_value: exactMatch TO:0000462
is_a: TO:0000462 ! starch gelatinization temperature
[Term]
id: CO_320:0000108
name: rice head rice trait
def: "Describes how much of a sample of milled rice comprises whole rather than broken kernels. Head rice is defined as kernels longer than 8/10th of the average length of whole kernels." [CO:curators]
synonym: "HdR" EXACT []
property_value: exactMatch TO:0000222
is_a: TO:0000222 ! head rice yield
[Term]
id: CO_320:0000109
name: rice caryopsis shape trait
def: "Shape of the caryopsis." [CO:curators]
synonym: "CaryoShp" EXACT []
property_value: exactMatch TO:0002730
is_a: TO:0002730 ! grain shape
[Term]
id: CO_320:0000110
name: rice caryopsis length trait
def: "The length of the caryopsis, ie the seed with seed coat fused to pericarp, which is the structure that remains after dehulling (decorticating) the grain and before milling, commonly known as brown rice." [CO:curators]
synonym: "CaryoLng" EXACT []
property_value: exactMatch TO:0000734
is_a: TO:0000734 ! grain length
[Term]
id: CO_320:0000111
name: rice brown rice protein content trait
def: "The concentration of protein in brown (dehulled) rice." [CO:curators]
synonym: "BRiceProtCt" EXACT []
property_value: exactMatch TO:0000138
is_a: TO:0000138 ! brown rice protein content
[Term]
id: CO_320:0000115
name: rice pericarp colour trait
def: "Colour of the pericarp." [CO:curators]
synonym: "PericCol" EXACT []
property_value: exactMatch TO:0000707
is_a: TO:0000707 ! pericarp color
[Term]
id: CO_320:0000117
name: rice caryopsis width trait
def: "The width of the caryopsis at its widest point at right angles to its length (ie the seed with seed coat fused to pericarp, which is the structure that remains after dehulling the grain and before milling)." [CO:curators]
synonym: "CaryoWdt" EXACT []
property_value: exactMatch TO:0000975
is_a: TO:0000975 ! grain width
[Term]
id: CO_320:0000121
name: rice sterile lemma shape trait
def: "Shape of the sterile lemmas." [CO:curators]
synonym: "LemaShp" EXACT []
property_value: exactMatch TO:0002726
is_a: TO:0002726 ! sterile lemma shape
[Term]
id: CO_320:0000124
name: rice rhizome and stolon formation trait
def: "Describes the presence of rhizomes, stolons and/or tubers in the mature plant." [CO:curators]
synonym: "RhyzForm" EXACT []
property_value: exactMatch TO:0002767
is_a: TO:0002767 ! rhizome formation
[Term]
id: CO_320:0000128
name: rice panicle axis texture trait
def: "Texture of the main axis of the panicle." [CO:curators]
synonym: "PanAxText" EXACT []
property_value: exactMatch TO:0002754
is_a: TO:0002754 ! inflorescence axis texture
[Term]
id: CO_320:0000132
name: rice ligule pubescence trait
def: "Presence and distribution of hairs on ligules." [CO:curators]
synonym: "LigPub" EXACT []
property_value: exactMatch TO:0002749
is_a: TO:0002749 ! ligule pubescence
[Term]
id: CO_320:0000137
name: rice flag leaf width trait
def: "Width of the uppermost leaf of the main culm." [CO:curators]
synonym: "FlgLfWdt" EXACT []
property_value: exactMatch TO:0002758
is_a: TO:0002758 ! flag leaf lamina width
[Term]
id: CO_320:0000138
name: rice flag leaf length trait
def: "Length of the uppermost leaf of the main culm." [CO:curators]
synonym: "FlgLfLng" EXACT []
property_value: exactMatch TO:0002757
is_a: TO:0002757 ! flag leaf length
[Term]
id: CO_320:0000141
name: rice panicle distance to basal branch trait
def: "Distance from the base of the panicle to the point of insertion of the lowest branch." [CO:curators]
synonym: "PanBasBrDist" EXACT []
property_value: exactMatch TO:0000545
is_a: TO:0000545 ! panicle base to lowest branch
[Term]
id: CO_320:0000144
name: rice awn thickness trait
def: "Thickness of awns." [CO:curators]
synonym: "AwThk" EXACT []
property_value: exactMatch TO:0002719
is_a: TO:0002719 ! awn thickness
[Term]
id: CO_320:0000146
name: rice awn length trait
def: "Length of awns." [CO:curators]
synonym: "AwLng" EXACT []
property_value: exactMatch TO:0000072
is_a: TO:0000072 ! awn length
[Term]
id: CO_320:0000150
name: rice anther length trait
def: "Anther length." [CO:curators]
synonym: "AnLt" EXACT []
property_value: exactMatch TO:0000531
is_a: TO:0000531 ! anther length
[Term]
id: CO_320:0000152
name: rice panicle shattering trait
def: "Describes the tendency of grains to fall off the panicle before it is threshed." [CO:curators]
synonym: "PanSh" EXACT []
property_value: broadMatch TO:0000406
is_a: TO:0000406 ! panicle threshability
[Term]
id: CO_320:0000154
name: rice culm node underlying colour trait
def: "Colour of nodes on the culm/stem underlying any anthocyanin markings." [CO:curators]
synonym: "CulmNodUndCol" EXACT []
property_value: broadMatch TO:0000059
is_a: TO:0000059 ! node color
[Term]
id: CO_320:0000155
name: rice culm diameter - 1st internode trait
def: "Diameter of basal portion (ie 1st elongated internode) of the main culm." [CO:curators]
synonym: "CulmDiam" EXACT []
property_value: exactMatch TO:0001035
is_a: TO:0001035 ! stem width
[Term]
id: CO_320:0000156
name: rice awn presence trait
def: "Presence of awns." [CO:curators]
synonym: "AwPres" EXACT []
property_value: exactMatch TO:0002734
is_a: TO:0002734 ! awn presence
[Term]
id: CO_320:0000158
name: rice pollen sterility trait
def: "The degree of male (pollen) sterility." [CO:curators]
synonym: "MaleSter" EXACT []
property_value: exactMatch TO:0000053
is_a: TO:0000053 ! pollen sterility
[Term]
id: CO_320:0000159
name: rice spikelet sterility trait
def: "Proportion of spikelets on a harvested panicle that contain unfilled grains." [CO:curators]
synonym: "SpkSter" EXACT []
property_value: exactMatch TO:0000436
is_a: TO:0000436 ! spikelet sterility
[Term]
id: CO_320:0000173
name: rice bacterial blight damage trait
def: "The type and severity of bacterial blight symptoms on leaves caused by the bacterial pathogen Xanthomonas oryzae pv. oryzae. Symptoms: lesions usually start near the leaf tip or leaf margins or both, and extend down the outer edge(s). Young lesions are pale green to grayish green, later turning yellow to gray (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath." [CO:curators]
synonym: "BBDam" EXACT []
property_value: exactMatch TO:0000175
is_a: TO:0000175 ! rice bacterial blight disease resistance
[Term]
id: CO_320:0000174
name: rice bacterial leaf streak damage trait
def: "The type and severity of bacterial leaf streak symptoms on leaves caused by the bacterial pathogen Xanthomonas oryzae pv. oryzicola. Symptoms: linear lesions with small bacterial exudates." [CO:curators]
synonym: "BLS" EXACT []
property_value: exactMatch TO:0000203
is_a: TO:0000203 ! rice bacterial leaf streak disease resistance
[Term]
id: CO_320:0000176
name: rice leaf blast damage trait
def: "The type and severity of leaf blast symptoms on leaves caused by the fungal pathogen Magnaporthe grisea (Pyricularia oryzae). Symptoms are necrotic lesions on the leaves, in severe cases leading to leaf death." [CO:curators]
synonym: "LfBlastDam" EXACT []
property_value: exactMatch TO:0000468
is_a: TO:0000468 ! rice leaf blast disease response
[Term]
id: CO_320:0000177
name: rice brown spot damage trait
def: "The type and severity of brown spot symptoms on leaves caused by the fungal pathogen Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae). Symptoms: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have the same color on the edges but have a pale, usually grayish center. Most spots have a light yellow halo around the outer edge." [CO:curators]
synonym: "BS" EXACT []
property_value: exactMatch TO:0000356
is_a: TO:0000356 ! rice brown spot disease response
[Term]
id: CO_320:0000178
name: rice false smut trait
def: "The type and severity of false smut symptoms caused by Ustilaginoidea virens. Symptoms: Infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls." [CO:curators]
synonym: "FSmut" EXACT []
property_value: exactMatch TO:0000129
is_a: TO:0000129 ! rice false smut disease response
[Term]
id: CO_320:0000179
name: rice grassy stunt 1 disease trait
def: "The type and severity of grassy stunt symptoms caused by the grassy stunt 1 virus (RGSV1). Symptoms: severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots." [CO:curators]
synonym: "RGSV1Sev" EXACT []
property_value: exactMatch TO:0000127
is_a: TO:0000127 ! rice grassy stunt virus-1 resistance
[Term]
id: CO_320:0000180
name: rice kernel smut trait
def: "The type and severity of kernel smut symptoms caused by Tilletia barclayana causing kernel smut." [CO:curators]
synonym: "KSmut" EXACT []
property_value: exactMatch TO:0000048
is_a: TO:0000048 ! rice kernel smut disease response
[Term]
id: CO_320:0000181
name: rice leaf scald damage trait
def: "The type and severity of leaf scald symptoms on leaves caused by the fungal pathogen Monographella albescens (Microdochium oryzae). Symptoms: lesions occur mostly near leaf tips, but sometimes start at the margin of the blade and develop into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo." [CO:curators]
synonym: "LfScald" EXACT []
property_value: exactMatch TO:0000378
is_a: TO:0000378 ! rice leaf scald disease response
[Term]
id: CO_320:0000182
name: rice narrow brown leaf spot damage trait
def: "The type and severity of narrow brown leaf spot symptoms on leaves caused by the fungal pathogen Sphaerulina oryzina (Cercospora janseana)." [CO:curators]
synonym: "NBLSDam" EXACT []
property_value: exactMatch TO:0000422
is_a: TO:0000422 ! rice narrow brown leaf spot disease response
[Term]
id: CO_320:0000183
name: rice ragged stunt disease trait
def: "The type and severity of ragged stunt symptoms caused by rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths." [CO:curators]
synonym: "RaggedStuntSev" EXACT []
property_value: exactMatch TO:0000386
is_a: TO:0000386 ! rice ragged stunt virus resistance
[Term]
id: CO_320:0000184
name: rice tungro disease trait
def: "The type and severity of tungro symptoms caused by the Rice tungro virus bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). Symptoms: yellow to yellow orange leaves, stunting and slightly reduced tillering." [CO:curators]
synonym: "RTungroSev" EXACT []
property_value: exactMatch TO:0000413
is_a: TO:0000413 ! rice tungro virus resistance
[Term]
id: CO_320:0000185
name: rice sheath rot trait
def: "The type and severity of sheath rot symptoms caused by Soracladium oryzae. Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle, sometimes coalescing to prevent emergence of panicle." [CO:curators]
synonym: "ShRotInc" EXACT []
property_value: exactMatch TO:0000086
is_a: TO:0000086 ! rice sheath rot disease response
[Term]
id: CO_320:0000186
name: rice stem rot trait
def: "The type and severity of stem rot symptoms caused by Magnaporthe salvinii (Nakatea sigmoidea, Sclerotium oryzae) and Helminthosporium sigmoideum var. irregulare. Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging." [CO:curators]
synonym: "StmRotInc" EXACT []
property_value: exactMatch TO:0000323
is_a: TO:0000323 ! rice stem rot disease response
[Term]
id: CO_320:0000187
name: rice ufra trait
def: "The type and severity of stem rot symptoms caused by the stem nematode Ditylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage, brown stains may develop on leaves and sheaths which later intensify to a dark brown color, distortion (twisting and withering) of young leaves, distortion of panicles which either remain enclosed within a swollen sheath, or partially emerge but are twisted and with unfilled grains, or emerge completely but with unfilled grains and resembling a whitehead." [CO:curators]
synonym: "UfraDam" EXACT []
property_value: exactMatch TO:0000121
is_a: TO:0000121 ! ufra damage
[Term]
id: CO_320:0000189
name: rice sheath blight trait
def: "The type and severity of sheath blight symptoms caused by Thanethoporus cucumeris (Rhizoctonia solani). Symptoms: ellipsoidal, necrotic grayish-green lesions, which may enlarge and coalesce with other lesions, initially on lower leaf sheaths." [CO:curators]
synonym: "ShBltInc" EXACT []
property_value: exactMatch TO:0000255
is_a: TO:0000255 ! rice leaf sheath blight disease response
[Term]
id: CO_320:0000192
name: rice yellow mottle disease trait
def: "The type and severity of yellow mottle disease symptoms caused by rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowing streaking of the leaves, delayed flowering or incomplete emergence of the panicles, in extreme cases, death of plants." [CO:curators]
synonym: "YellowMottleSev" EXACT []
property_value: exactMatch TO:0000088
is_a: TO:0000088 ! rice yellow mottle virus resistance
[Term]
id: CO_320:0000193
name: rice hoja blanca disease trait
def: "The type and severity of hoja blanca disease symptoms caused by rice hoja blanca virus (RHBV) causing hoja blanca. Symptoms: cream colored to yellow spots, elongating and coalescing fo form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical 'parrot beak' shape of deformation." [CO:curators]
synonym: "HojaBlancaSev" EXACT []
property_value: exactMatch TO:0000147
is_a: TO:0000147 ! rice hoja blanca disease resistance
[Term]
id: CO_320:0000194
name: rice udbatta disease trait
def: "The type and severity of udbatta disease symptoms caused by Balansia oryzae-sativae (Ephelis oryzae). Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods." [CO:curators]
synonym: "UDInc" EXACT []
property_value: exactMatch TO:0000045
is_a: TO:0000045 ! rice udbatta disease response
[Term]
id: CO_320:0000195
name: rice bakanae disease trait
def: "In of bakanae disease symptoms caused by Gibberella fujikuroi. Symptoms: the plant elongates abnormally, has few tillers, and usually dies before producing grains." [CO:curators]
synonym: "BakInc" EXACT []
property_value: exactMatch TO:0000418
is_a: TO:0000418 ! rice bakanae disease response
[Term]
id: CO_320:0000196
name: rice brown planthopper damage trait
def: "The extent of damage caused by brown planthopper (Nilparvata lugens). Symptoms: Partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy." [CO:curators]
synonym: "BPHDam" EXACT []
property_value: exactMatch TO:0000424
is_a: TO:0000424 ! brown planthopper resistance
[Term]
id: CO_320:0000197
name: rice case worm damage trait
def: "The extent of plant damage caused by caseworm (Nymphula depunctalis). Symptoms: only the papery upper epidermis of the leaf remains after larvae have fed on the internal leaf tissue." [CO:curators]
synonym: "CaseWormDam" EXACT []
property_value: exactMatch TO:0000405
is_a: TO:0000405 ! caseworm resistance
[Term]
id: CO_320:0000199
name: rice gall midge damage trait
def: "The extent of plant damage caused by gall midge (Orseolia oryzae). Symptoms: light-colored tubular galls resembling an onion leaf on the youngest leaf of the shoot in a tiller." [CO:curators]
synonym: "GallMidgeDam" EXACT []
property_value: exactMatch TO:0000423
is_a: TO:0000423 ! gall midge resistance
[Term]
id: CO_320:0000200
name: rice green leafhopper damage trait
def: "The extent of damage caused by green leafhopper (Nephotettix virescens and Nephotettix cincticeps). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy." [CO:curators]
synonym: "GLhDam" EXACT []
property_value: exactMatch TO:0000212
is_a: TO:0000212 ! green leafhopper resistance
[Term]
id: CO_320:0000201
name: rice leaffolder damage trait
def: "The extent of leaf damage caused by leaffolder (Cnaphalocrosis medinalis or Marasmia patnalis). Symptoms: Larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding." [CO:curators]
synonym: "LfFolderDam" EXACT []
property_value: exactMatch TO:0000403
is_a: TO:0000403 ! leaf-folder resistance
[Term]
id: CO_320:0000203
name: rice bug damage trait
def: "The extent of plant damage caused by rice bug (Leptocorisa oratorisa)." [CO:curators]
synonym: "RBugDam" EXACT []
property_value: exactMatch TO:0000220
is_a: TO:0000220 ! rice bug resistance
[Term]
id: CO_320:0000206
name: rice whorl maggot damage trait
def: "The extent of plant damage caused by rice whorl maggot (Hydrellia philippina). Symptoms: maggots eat the leaf margins causing conspicuous injury and sometimes stunting of plants." [CO:curators]
synonym: "RWhorlMaggDam" EXACT []
property_value: exactMatch TO:0000332
is_a: TO:0000332 ! rice whorl maggot resistance
[Term]
id: CO_320:0000208
name: rice stem borer damage trait
def: "The extent of damage caused by stem borers, which include Chilo suppressalis (striped), C. polychrysus (dark headed), Rupela albinella (South American white), Scirpophaga incertulas (yellow), S innotata (white), Sesamia inferens (pink), Maliarpha separatella (African whiteheads), Diopsis macrophthalma (Stalked-eyed fly), and several other species." [CO:curators]
synonym: "StemBorer" EXACT []
property_value: exactMatch TO:0000454
is_a: TO:0000454 ! stem borer resistance
[Term]
id: CO_320:0000210
name: rice thrip damage trait
def: "The extent of damage caused by thrips (Stenchaetothrips biformis)." [CO:curators]
synonym: "ThripDam" EXACT []
property_value: exactMatch TO:0000154
is_a: TO:0000154 ! thrips resistance
[Term]
id: CO_320:0000211
name: rice whitebacked planthopper damage trait
def: "The extent of damage caused by whitebacked planthopper (Sogatella furcifera). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy." [CO:curators]
synonym: "WBPH" EXACT []
property_value: exactMatch TO:0000205
is_a: TO:0000205
[Term]
id: CO_320:0000213
name: rice bird damage trait
def: "The extent of damage caused by birds." [CO:curators]
synonym: "BirdDam" EXACT []
property_value: exactMatch TO:0000260
is_a: TO:0000260
[Term]
id: CO_320:0000214
name: rice rat damage trait
def: "The extent of damage caused by rats. Symptoms: the tiller is cut at a 45 degrees angle. Damage is typically heavier in the center of a crop (stadium effect). A tiller cut through by a rodent is likely to regrow, if this is after maximum tillering then the regrown tiller is unlikely to produce panicles prior to harvest. Often the regrown, but non productive, tillers are not scored as rodent damage." [CO:curators]
synonym: "RatDam" EXACT []
property_value: exactMatch TO:0000117
is_a: TO:0000117
[Term]
id: CO_320:0000216
name: rice delphacid trait
def: "The extent of damage caused by rice delphacid (Sogatodes oryzicola (Tagosodes orizicolus)). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy." [CO:curators]
synonym: "RDelphDam" EXACT []
property_value: exactMatch TO:0000246
is_a: TO:0000246
[Term]
id: CO_320:0000218
name: rice seedling height trait
def: "Height of seedlings, measured from the base of the shoot to the tip of the tallest leaf blade." [CO:curators]
synonym: "SeedlHt" EXACT []
property_value: exactMatch TO:0000019
is_a: TO:0000019
[Term]
id: CO_320:0000486
name: rice apiculus shape trait
def: "Shape of the apiculus of the lemma." [CO:curators]
synonym: "ApSh" EXACT []
property_value: broadMatch TO:0000079
is_a: TO:0000079