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Issues list

Optimise Report File Size and Load Time enhancement New feature or request
#32 opened May 5, 2023 by GallVp
BUSCO Options
#33 opened May 5, 2023 by GallVp
BlobTools enhancement New feature or request
#90 opened Jun 1, 2024 by GallVp
[UPDATE] GITHUB/NCBI/SRA-TOOLS -> 3.1.1 enhancement New feature or request
#108 opened Jul 23, 2024 by GallVp
[UPDATE] GITHUB/SHENWEI356/SEQKIT -> 2.8.2 enhancement New feature or request
#109 opened Jul 23, 2024 by GallVp
[UPDATE] GITHUB/OUSHUJUN/EDTA -> 2.2.0 enhancement New feature or request
#112 opened Jul 24, 2024 by GallVp
[UPDATE] GITHUB/PYTHON/CPYTHON -> 3.12.4 enhancement New feature or request
#113 opened Jul 24, 2024 by GallVp
Add a validation check for 100% Ns in a sequence enhancement New feature or request
#173 opened Nov 3, 2024 by GallVp 3.0.0
1
Add a parameter to enable/disable multi-mapping in the HiC module enhancement New feature or request
#189 opened Mar 10, 2025 by GallVp 3.0.0
@GallVp
Update nf-core template, modules and sub workflows enhancement New feature or request
#191 opened Mar 11, 2025 by GallVp 3.0.0
2
@GallVp
[UPDATE] NCBI FSC-GX enhancement New feature or request
#195 opened Mar 18, 2025 by GallVp 3.0.0
1
@GallVp
Investigate phasedWgsVsSNP
#213 opened May 22, 2025 by GallVp 3.0.0
Sort BAM by read names for juicer pre
#216 opened Jun 3, 2025 by GallVp 3.0.0
@GallVp
Drop the hic_samtools_ext_args parameter
#217 opened Jun 3, 2025 by GallVp 3.0.0
@GallVp
Add hic_juicer_pre_assembly_mode flag enhancement New feature or request
#219 opened Jun 3, 2025 by GallVp 3.0.0
@GallVp
Can we automatically label sequences for PLOTSR? enhancement New feature or request
#116 opened Jul 24, 2024 by GallVp
1
[Project][HiC][Combined haps] Add HiC contact maps for combined haps enhancement New feature or request
#128 opened Sep 16, 2024 by christinawu2008 3.0.0
@GallVp
1
Kraken2 DB: missing pyrus bug Something isn't working
#181 opened Nov 19, 2024 by CeciliaDeng 3.0.0
1
Make the alphanumeric FASTA sequence sorting in HiC map optional enhancement New feature or request
#188 opened Mar 10, 2025 by GallVp 3.0.0
1
@GallVp
1
Create a map-back-profile enhancement New feature or request
#193 opened Mar 13, 2025 by GallVp 3.0.0
1
Skip FastQC by default enhancement New feature or request
#199 opened Apr 29, 2025 by GallVp 3.0.0
1
@GallVp
1
[Task][HiC][Combined haps] Add bam_fasta_yahs_juicer_pre_juicer_tools_pre sub workflow
#211 opened May 21, 2025 by GallVp
5 tasks done
3.0.0
@GallVp
1
Move to BWA-MEM2 for improved performance enhancement New feature or request
#66 opened Jun 27, 2023 by GallVp
2
[UPDATE] GITHUB/NCBI/FCS -> 0.5.4 enhancement New feature or request
#114 opened Jul 24, 2024 by GallVp
@GallVp
2
Don't remove duplicates and secondary alignments before HiCQC enhancement New feature or request
#197 opened Apr 23, 2025 by GallVp 3.0.0
1
@GallVp
2
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