Skip to content

Latest commit

 

History

History
401 lines (306 loc) · 15.1 KB

CHANGELOG.md

File metadata and controls

401 lines (306 loc) · 15.1 KB

25.1.21

  • Bug fixes for the UI

25.1.20

  • Bug fixes for the UI

25.1.15

Highlights

  • New UI updates:
    • An Event Logs page for seeing the logs generated by your Pioreactors
    • A detailed overview of your cluster's leader-specific duties on the new Leader's page.
      • See the Leader's filesystem, logs, update cluster clocks, and view important running jobs.
  • View different Pioreactors' plugins on the Plugins page, and install to specific Pioreactor vs entire cluster.
  • Manage your calibrations from the UI's new Calibrations page.
    • View existing calibrations, set active calibrations, and download calibration files.

Web API changes

  • New API to retrieve and set clocks on Pioreactors
  • GET /api/units/<pioreactor_unit>/system/utc_clock
  • GET /unit_api/system/utc_clock
  • POST /api/system/utc_clock
  • POST /unit_api/system/utc_clock
  • New log APIs
  • GET /api/experiments/<experiment>/recent_logs
  • GET /api/experiments/<experiment>/logs
  • GET /api/logs
  • GET /api/workers/<pioreactor_unit>/experiments/<experiment>/recent_logs
  • GET /api/workers/<pioreactor_unit>/experiments/<experiment>/logs
  • GET /api/units/<pioreactor_unit>/logs
  • POST /workers/<pioreactor_unit>/experiments/<experiment>/logs
  • New calibrations APIs
  • GET /api/workers/<pioreactor_unit>/calibrations
  • GET /unit_api/calibrations
  • GET /unit_api/active_calibrations
  • GET /api/workers/<pioreactor_unit>/calibrations/<device>
  • GET /unit_api/calibrations/<device>
  • PATCH /api/workers/<pioreactor_unit>/active_calibrations/<device>/<cal_name>
  • PATCH /unit_api/active_calibrations/<device>/<cal_name>
  • DELETE /api/workers/<pioreactor_unit>/active_calibrations/<device>/<cal_name>
  • DELETE /api/workers/<pioreactor_unit>/calibrations/<device>/<cal_name>
  • DELETE /unit_api/active_calibrations/<device>/<cal_name>
  • DELETE /unit_api/calibrations/<device>/<cal_name>
  • New API for plugins
  • GET /api/units/<pioreactor_unit>/plugins/installed
  • PATCH /api/units/<pioreactor_unit>/plugins/install
  • PATCH /api/units/<pioreactor_unit>/plugins/uninstall
  • Changed the settings API (see docs).
  • New /api/units that returns a list of units (this is workers & leader). If leader is also a worker, then it's identical to /api/workers
  • New /api/experiments/<experiment>/historical_worker_assignments that stores historical assignments to experiments
  • New Path API for getting the dir structure of ~/.pioreactor:
  • /unit_api/system/path/<path>

24.12.10

  • Hotfix for UI settings bug

24.12.3

  • fix dosing in the UI not working in Manage All
  • New Export Data page
  • New API for exporting datasets

24.10.30

  • fix manual dosing updates in the UI not working.

24.10.29

  • fix for workers being locked up

24.10.28

  • fix for env bug

24.10.16 and 24.10.20

  • New dataset exports from the Export data page in the UI: calibrations and liquid-volumes.
  • Added a "partition by unit" option to the Export data page that will create a csv per Pioreactor in the export, instead of grouping them all together.
  • faster UI response times when starting jobs
  • Because we are now storing liquid_volume in the database, you can add charts in the UI that track the volume over time:
    1. Add the following yaml contents to ~/.pioreactor/plugins/contrib/charts/lqiuid_volume.yaml: https://gist.github.com/CamDavidsonPilon/95eef30189101da69f706d02ef28d972
    2. In your config.ini, under ui.overview.charts, add the line liquid_volume=1.
  • New API endpoints for getting the current settings of a running job:
    • Per pioreactor:
      • GET: /unit_api/jobs/settings/job_name/<job_name>
      • GET: /unit_api/jobs/settings/job_name/<job_name>/setting/<setting>
    • Across the cluster:
      • GET: /api/jobs/settings/job_name/<job_name>/setting/<setting>
      • GET: /api/jobs/settings/job_name/<job_name>/experiments/<experiment>
      • GET: /api/jobs/settings/job_name/<job_name>/experiments/<experiment>/setting/<setting>
      • GET: /api/jobs/settings/workers/<unit>/job_name/<job_name>/experiments/<experiment>
      • GET: /api/jobs/settings/workers/<unit>/job_name/<job_name>/experiments/<experiment>/setting/<setting> Ex: query the temperature of a Pioreactor: curl http://pio01.local/unit_api/jobs/settings/job_name/temperature_automation/setting/temperature

24.10.1

  • bug fix for "Manage all" that would start activities in all Pioreactors, whether they were in the experiment or not.
  • fix for bug when clicking a legend element it not hiding
  • fix
  • amount of data shown on charts is now a function of the OD sampling rate
  • allow for showing more than 16 workers in a chart.
  • bug fix for "color" error when many workers on a chart.
  • bug fix for leader starting when an experiment profile was started which referenced leader, even if the leader wasn't in the experiment.

24.9.25

  • Better experiment selection dropdown
  • replace momentjs with dayjs
  • reduce the list of supported browsers

24.9.20

  • fixes to the UI for new json version api

24.9.19

  • improvements to kill jobs

24.9.18

  • API changes for update routines (and lots more).

24.9.17

  • fixes for pumping dialogs

24.9.16

  • lots of backend changes to support new worker web APIs. Too numerous to list, so see our docs.
  • remove updating to development version. This was confusing and error prone for users. If a user wants development version, they can "pay the toll" of SSHing in to do it.
  • fixed Hours Elapsed not updating in Overview
  • New menu for inventory bulk actions

24.8.21

  • adding inputs to experiment profiles
  • breaking up logs in log tables
  • better empty state on Pioreactors
  • make deleting an experiment more clear
  • use new config logging ui_log_file location instead in the .env
  • return new leader-only config.

24.7.18 & 24.7.19

  • The Chips release! Lots of chips
  • Support the removal of "controller" code. This includes new background job contrib files that reference *_automations instead of controllers.

24.7.3

  • significant web backend API changes! See list of rules in docs.
  • A new live preview in the UI's experiment profile editor. This preview tool is useful for getting immediate feedback when writing a profile. We'll keep on adding to this to improve the edit-profile workflow - please send us feedback!
  • Better user interaction on the Pioreactors page when the assigned experiment and "viewing" experiment are different.
  • Select / Deselect all Pioreactors to assign to an experiment faster.
  • Fix UI code editor from being unresponsive when all the text was removed.
  • Experiment profiles won't be overwritten if providing the same filename as an existing profile.

24.6.11

  • 24.6.10 was a bad release

24.6.10

  • more additions to the Pioreactor page
  • fix performing an "undo" when editing the config.ini and experiment profiles.
  • Changed the web backend API endpoints for time-series, logs, shutdown, reboot, and plugins to be more RESTful. See docs for updated rules in the docs.
  • better clean up when a worker is removed from a cluster.
  • Added a "retry failed tests" to the UI's self-test dialog.

24.5.31 && 24.5.32

  • New /pioreactor/worker page
  • New MQTT topic for logs

24.5.20 & 24.5.21

  • small updates

24.5.13

  • major upgrade of packages, including MUI, react, victory and more.
  • removed unused packages
  • UI's code sections use syntax-highlighting and other nicer features for editing yaml and ini files.
  • UI chart legend's will support more than 8 Pioreactors.
  • UI chart colors are consistent across charts in the Overview.
  • fix "Manage all" not sending the correct dosing command to workers.

24.4.30

  • Support for Pioreactor 20ml v1.1
  • Lots of small UI interactions:
    • better default states
    • better "loading" screens
    • a11y improvements

24.4.11

  • first update ui, before other things.

24.4.10

  • updates for the latest app release
  • some accessibility improvements
  • adding RPi model to inventory page
  • log when a pioreactor changes experiment or active status

24.4.4

  • Fix log table not showing entries
  • Fix button not showing up in UI

24.4.3

  • Bug fixes from 24.4.2

24.4.2

24.3.9

  • performance improvements by using less backend calls

24.3.8

  • performance improvements by using less mqtt clients.

24.3.5

  • Fix experiment profile name not showing up.

24.3.4

  • Fixes for the library swap to MQTT.js
  • Performance improvements
  • Dynamically disable / enable "update" options

24.2.25

  • Change MQTT library to mqtt.js
  • Fix media card
  • fixed bug that was partially crashing the UI if some bad syntax was entered into a custom yaml file. Sorry!
  • fixed bug that was causing bad json from the server, causing empty / non-loading areas in the UI. Sorry!
  • fixed datum bug in the Overview that was crashing the UI. Sorry!
  • added Pioreactor specific software version to the UI: Page Pioreactors -> Manage -> System -> Version

24.2.9

  • fixed a bug that was causing colors between graphs to not be aligned
  • adding grouped buttons for changing chart settings

24.1.30

  • profiles in the UI are sorted by their last edit time.
  • fixed a bug in the chart of OD reading that was causing historical and realtime data to be different lines.
  • new profiles for next Pioreactor release

24.1.25

  • Update experiment profiles:
  • fix errors when there are no profiles
  • highlights
  • update to new profile schema
  • Updates for new OD topics in MQTT
  • Update chart schema to allow for lists in mqtt_topic

24.1.12

  • fix initial state of boolean switches

24.1.8

  • added MAC address to system tab
  • fixing export bug
  • adding ir_led_intensities to exports page

23.12.10

  • Ability to update via our release_archives (available on the github release page) via the UI. To turn this feature off (which is a recommended practice when you expose your UI publically), add an empty file called DISALLOW_UI_UPLOADS to the ~/.pioreactor directory.

23.11.31

  • Fix for exporting data from the UI

23.11.30

  • The automation form in the UI for pid_morbidostat was missing volume, that's been added now.
  • UI tweaks

23.11.29

  • new type for fields of automations. Currently available: numeric and string
  • light validation for automation forms
  • Merged the turbidostat automations into one. You can either select target target nOD or target OD, but not both!

23.11.28

  • Include both Target nOD and Target OD.

23.11.27

  • The "Stop" button is always available now in the "Dosing" tab for "Manage all Pioreactors".
  • Fix for Ngrok remote access
  • When using "hours" for charts, this also changes the Log Table's "time" column

23.11.18

  • The "Label" step in the New Experiment flow is skipped if there is only 1 active Pioreactor in the cluster.
  • Simplify some UI elements.
  • Security improvements
  • Reduce the default LED intensity in light_dark_cycle from 50% to 5%. This is more appropriate for sparse cultures.

23.11.08

  • some updates for the 23.11.08 release of Pioreactor software.

23.10.20

  • Prepare for bookworm release
  • Adding ability to change x-axis to duration since experiment start, instead of clock time.
  • small UI improvements

23.10.10

  • Fix bug that wasn't allowing for manual dosing / LED updates.

23.10.4

  • Adding "install plugin by name" button to UI.

23.9.20

  • Fixing /updates bug

23.9.19

  • Adding a RPi shutdown button to the UI.

23.9.18

  • Fixed bug that ignored .yml files
  • Security improvements
  • Ability to create and edit Experiment Profiles in the UI
  • The dropdown for historical config files was dropping the latest entry. This has been fixed.

23.8.28

  • Pioreactor's IPv4 and hostname is now displayed under System in the UI.
  • added another self-test test to confirm that an aturbid liquid in vial will produce a near 0 signal.
  • general improvements to self-test

23.7.31

  • copy changes and improvements
  • fixed bug that had the wrong units and defaults for Light Dark Cycle automation

23.7.25

  • Mostly copy changes and improvements

23.6.26

  • Adding ability to upgrade to develop branches

23.6.6

  • Adding manual dosing adjustment form under Dosing tab
  • Adding support for experiment profiles

23.5.9

  • New PWM voltage in Systems card.
  • Improvements to changing LED values.

23.4.14

  • Added new "Past Experiments" page
  • Query params can be added to /export-data that will populate the datasets and experiment to export
  • New API routes for some endpoints: /api/stop, /api/run, /api/unit_labels/. See docs: https://docs.pioreactor.com/developer-guide/web-ui-api

23.4.3

  • Backend work to complete calibrations utilities:
    • Edits to the calibrations table in the database require a full drop and recreation.
    • New API endpoints on the webserver to store calibrations, get calibrations, set as current, etc.
    • add robots.txt that disallows crawlers

23.3.20

  • New route /api/installed_plugins/<filename> for getting back specific Python files in the plugins folder. Later, this will be generalized to getting entry_point plugins, too.
  • Python files in plugins/ folder on leader are viewable on the /plugins page in the UI.
  • Python files in plugins/ folder on leader are uninstallable (aka deleted) on the /plugins page in the UI.
  • Better workflow for starting a new experiment

23.3.15

  • Performance improvements
  • Better empty states

23.3.8

  • Adding lookback parameter to all charts.
  • Changes to make charts YAML options more flexible

23.3.6

  • Fix 'resume' / 'pause' text switching
  • huey.db now lives in /tmp/pioreactorui_cache

23.3.1

  • Better manual dosing page
  • Pioreactor hardware version and serial number are displayed in the /pioreactor page, under Manage -> System.

23.2.16

  • Fix chart issue where data from od_readings wasn't being displayed correctly if multiple non-REF sensors were used.

23.2.10

  • Better error handling when a yaml file is not correct format.
  • Improvements to Plugins page

23.2.6

  • Adding pioreactor_unit_activity_data_rollup to exportable datasets.

23.2.4

Lots of changes the the backend API, make note!

  • The API is more RESTful now.
  • Changing settings now have a button to update settings, along with hitting the enter key
  • Under all Pioreactor settings, boolean settings now show up correctly.
  • Fixed error where a large cache was not able to be written to disk due to permissions errors.
  • Time series charts are now able to be added the the UI. Put a yaml file under ~/.pioreactor/plugins/ui/contrib/charts

23.1.1

  • Fix for led_change_events export.
  • Fixes for fraction_of_volume_that_is_alternative_media chart in the UI.
  • The UI will warn you if it's not able to connect to MQTT

23.1.0

  • add /api/get_ui_version

22.12.0

  • First changelog entry.
  • Fix caching bug that was preventing the UI from displaying newly added Pioreactors.