10_temperature_variation_experiment_with_dosing.yaml

experiment_profile_name: temperature variation experiment with dosing

metadata:
  author: Pete Davidson
  description: >
    At start, stirring, temperature, and a chemostat (volume=1, duration=20) will start.
    Start temperature is 35 C for all bioreactors.
    After 24 hours, the temperature in pio-dev-00 will increase by 2 C every two hours until it reaches a maximum of 50 C, after which the temperature stays constant.
    After 24 hours, the temperature in pio-dev-01 will increase by 1 C every two hours until it reaches a maximum of 50 C, after which the temperature stays constant.
    After 24 hours, the temperature in pio-dev-02 will increase by 4 C every four hours until it reaches a maximum of 50 C, after which the temperature stays constant.

common:
  jobs:
    stirring:
      actions:
        - type: start
          hours_elapsed: 0.0
    dosing_automation:
      actions:
        - type: start
          hours_elapsed: 0.0
          options:
            automation_name: chemostat
            volume: 1.0
            duration: 20
    temperature_automation:
      actions:
        - type: start
          hours_elapsed: 0.0
          options:
            automation_name: thermostat
            target_temperature: 35

pioreactors:
  pio-dev-00:
    jobs:
      temperature_automation:
        actions:
          # Increasing temperature by 2°C every 2 hours until 50°C
          - { type: update, hours_elapsed: 24.0, options: { target_temperature: 37 } }
          - { type: update, hours_elapsed: 26.0, options: { target_temperature: 39 } }
          - { type: update, hours_elapsed: 28.0, options: { target_temperature: 41 } }
          - { type: update, hours_elapsed: 30.0, options: { target_temperature: 43 } }
          - { type: update, hours_elapsed: 32.0, options: { target_temperature: 45 } }
          - { type: update, hours_elapsed: 34.0, options: { target_temperature: 47 } }
          - { type: update, hours_elapsed: 36.0, options: { target_temperature: 49 } }
          - { type: update, hours_elapsed: 38.0, options: { target_temperature: 50 } }

  pio-dev-01:
    jobs:
      temperature_automation:
        actions:
          # Increasing temperature by 1°C every 2 hours until 50°C
          - { type: update, hours_elapsed: 24.0, options: { target_temperature: 36 } }
          - { type: update, hours_elapsed: 26.0, options: { target_temperature: 37 } }
          - { type: update, hours_elapsed: 28.0, options: { target_temperature: 38 } }
          - { type: update, hours_elapsed: 30.0, options: { target_temperature: 39 } }
          - { type: update, hours_elapsed: 32.0, options: { target_temperature: 40 } }
          - { type: update, hours_elapsed: 34.0, options: { target_temperature: 41 } }
          - { type: update, hours_elapsed: 36.0, options: { target_temperature: 42 } }
          - { type: update, hours_elapsed: 38.0, options: { target_temperature: 43 } }
          - { type: update, hours_elapsed: 40.0, options: { target_temperature: 44 } }
          - { type: update, hours_elapsed: 42.0, options: { target_temperature: 45 } }
          - { type: update, hours_elapsed: 44.0, options: { target_temperature: 46 } }
          - { type: update, hours_elapsed: 46.0, options: { target_temperature: 47 } }
          - { type: update, hours_elapsed: 48.0, options: { target_temperature: 48 } }
          - { type: update, hours_elapsed: 50.0, options: { target_temperature: 49 } }
          - { type: update, hours_elapsed: 52.0, options: { target_temperature: 50 } }


  pio-dev-02:
    jobs:
      temperature_automation:
        actions:
          # Increasing temperature by 4°C every 4 hours until 50°C
          - { type: update, hours_elapsed: 24.0, options: { target_temperature: 39 } }
          - { type: update, hours_elapsed: 28.0, options: { target_temperature: 43 } }
          - { type: update, hours_elapsed: 32.0, options: { target_temperature: 47 } }
          - { type: update, hours_elapsed: 36.0, options: { target_temperature: 50 } }