diff --git a/README.md b/README.md index 5e0dc12..b127050 100644 --- a/README.md +++ b/README.md @@ -16,11 +16,18 @@ Primertrim requires vsearch, our recommended method of installation is through c ```bash git clone https://github.com/PennChopMicrobiomeProgram/primertrim.git cd primertrim -conda env create -f primertrim_env.yml -n primertrim +conda env create -f primertrim_env.yml -n primertrim conda activate primertrim +conda install -c conda-forge -c bioconda vsearch pip install . ``` +We also have a docker image available on DockerHub: + +``` +docker run --rm -it ctbushman/primertrim:latest ptrim -h +``` + ## Algorithm Primer detection proceeds in three stages: complete matching, partial