The values of the MRNM field.

[tanyasarkjain]

Hello,
I ran TRGT genotype with my sample. I see that the MRNM values get set to "=" even for single end read sequencing that has a FLAG value of 0. Why is this? it's causing an issue with Samtools validation

[egor-dolzhenko]

Apologies for the late reply and thank you for reporting this. TRGT's BAM files were originally not meant to be directly used by the end user and so some fields were simply set to default values. We will address this in an upcoming release. If you'd rather not wait for the release, please feel free to reach out by email and we will send you a development version of TRGT as soon as this change is implemented.