isoseq ERROR: stoi

[MitsuhikoP]

I downloaded isoseq v4.2.0 via Bioconda. However, I got an error message.

isoseq collapse -j 4 test.bam flnc.bam out.gff
isoseq ERROR: stoi

I could use it in the previous version 4.0.0.
I got the same error message with pbindex.

Does this error depend on my environment?

[tbooth]

Same error here. Works on one system but fails on an almost identical system that has more RAM. My best guess is that the code is parsing /proc/meminfo (it definitely opens this file) and then falling over as one of the numbers is too big.

Not sure why it would need to look in that file rather than just calling sysinfo(2) - it's impossible to tell since everything is closed-source, despite having pages up on GitHub.