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Additional WGS-WDL backends - using Kubernetes #137

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MireiaBN opened this issue Jul 15, 2024 · 1 comment
Open

Additional WGS-WDL backends - using Kubernetes #137

MireiaBN opened this issue Jul 15, 2024 · 1 comment
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enhancement New feature or request

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@MireiaBN
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Is your feature request related to a problem? Please describe.
We are going to use the WGS-WDL pipeline for LR PacBio sequencing. We will set it up on the recommended backends according to the specified documentation. However, we have a Kubernetes infrastructure that would like to use since it would be more efficient in the long term.

Describe the solution you'd like
Support to run succesfully the WGS-WDL pipeline on a Kubernetes infrastructure.

Describe alternatives you've considered
NA.

Additional context
NA

@MireiaBN MireiaBN added the enhancement New feature or request label Jul 15, 2024
@williamrowell
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Hello,

Do you have any examples or documentation for running Cromwell on k8s? I have only been able to find this 2 year old README from IBM: https://github.com/IBM/cromwell-on-ibmcloud/blob/main/k8s/README.md. Given that I don't have much direct experience with k8s or a place to test, I think it's unlikely that I'll be able to get to this any time soon. Can you provide examples of what would need to change in the backend configuration?

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