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Changelog.rst

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@@ -14,7 +14,7 @@ New features
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* PhotonBeamParameters to parametrize photon beams.
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* XCSITPhotonDetector and XCSITPhotonDetectorParameters for 2D pixel detector simulation. Requires Geant4 and XCSIT being installed, these are not part of the external libraries shipped with simex_platform (partly due to licensing issues). Disabled in the build system by default.
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* PlasmaXRTSCalculator reads propagated wavefront data to synthesize scattering spectrum with instrumental broadening.
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* XFELPhotonAnalysis for diagnostics of wavefront data stored in native FAST/WPG wavefront format. OpenPMD currently not supported. bin/prop_diagnostics.py added as CLI.
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* Conversion from PIC openPMD to simplex FEL code input.
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* Adding ocelot electron beam simulation framework and FEL code to external libraries.
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* Various tools to steer Esther radiation-hydrodynamics simulations and experiment design.
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* Converter for Shadow3 raytracing beams into OpenPMD particle-mesh data. To be used as python script in Oasys.
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Bug fixes and enhancements
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""""""""""""""""""""""""""
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* Removed random rotation in XMDYNDemoPhotonMatterInteractor since done in SingFELPhotonDiffractor
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* Improve MPI parallelization in EMCOrientation
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* Make use of units more consistent in PlasmaXRTSCalculator
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* Replaced singfel by pysingfel (reimplementation in python, less dependencies on fat libraries like boost, armadillo).
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* Exposing most Calculators, Parameters, Utilities, and Analysis objects in SimEx top level module. (>>> from SimEx import SingFELPhotonDiffractor).
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* Azimuthal integration of diffraction patterns uses pyFAI.
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* Fixing pdb parser to parse large (>100000 atoms) pdbs.
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* WPG uses threaded version (openmp) of SRW.
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* Ability to process time-independent wavefront data (one slice in frequency space).
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* PhotonDiffractors write one single hdf5 file which links to individual patterns.
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* Using xraydb (github/scikit-beam/xraydb) for x-ray material properties and atomic levels.
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* Automated collection of system variables to setup MPI parameters for parallel backengine execution.
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* Various bugs in XMDYNDemoPhotonMatterInteractor
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* EMCOrientation: Parallel improvements to create backengine input data photons.dat
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* Fixing EMC for new diffr data format.
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* Adding parameters cpus_per_task and forced_mpi_command and default handling.
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* Adding parallel backengines for high performance backengine execution.
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Documentation
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"""""""""""""
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* SimEx single-particle imaging tutorial moved to wiki (github.com/eucall-software/simex_platform/wiki
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* New tutorial for usage of Esther rad-hydro simulations
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* Demonstration of new diagnostics tools for wavefront and diffraction data.
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Build system and deployment
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"""""""""""""""""""""""""""
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* Various improvements in docker image generation and usage.
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* Added pyqt to dockerfiles
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* Added --bind-to none to mpi command
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* Updated Docker files

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