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Commit dd04702

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committedApr 18, 2025
added check to skip sarcpdo for now in the improve wrapper script
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‎scripts/prepare_data_for_improve.py

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@@ -149,6 +149,8 @@ def process_datasets(args):
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logger.info("importing datasets...")
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data_sets = {}
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for data_set in data_sets_info.keys():
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if data_set == 'sarcpdo':
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continue
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data_sets[data_set] = cd.load(name=data_set, local_path=local_path)
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logger.info("importing datasets... done")
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@@ -159,6 +161,8 @@ def process_datasets(args):
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experiments = []
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logger.debug("creating list of datasets that contain experiment info ...")
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for data_set in data_sets_info.keys():
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if data_set == 'sarcpdo':
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continue
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# not all Datasets have experiments / drug response data
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if data_sets[data_set].experiments is not None:
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logger.debug(f"experiment data found for {data_set}")
@@ -644,6 +648,8 @@ def split_data_sets(
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random_seeds = [None] * args.NUM_SPLITS
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for data_set in data_sets_info.keys():
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if data_set == 'sarcpdo':
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continue
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if data_sets[data_set].experiments is not None:
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logger.info(f'creating splits for {data_set} ...')
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# getting "<DATASET>_all.txt"

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