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Updating All site pages and links and counts and tables with latest data
1 parent bb95e02 commit bc28a7a

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‎.github/workflows/main.yml

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on:
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push:
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branches:
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- builder_branch_JJ
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- docs_update_4_5_24
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- doc_update_4_23_24
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- docker-build-multi
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# Allows you to run this workflow manually from the Actions tab
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workflow_dispatch:
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‎docs/_data/beataml_table.csv

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"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
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"Transcriptomics",18306,707
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"Proteomics",7356,210
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"Mutations",3454,871
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"Transcriptomics",15029,707
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"Proteomics",7267,210
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"Mutations",3403,871

‎docs/_data/broad_sanger_table.csv

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"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
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"Transcriptomics",37290,1697
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"Proteomics",12936,1008
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"Copy_number",24766,1790
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"Mutations",21658,1729
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"Transcriptomics",19335,1697
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"Proteomics",12777,1008
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"Copy_number",19210,1790
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"Mutations",20394,1729

‎docs/_data/cptac_table.csv

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"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
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"Transcriptomics",38406,1113
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"Proteomics",15273,1086
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"Copy_number",38394,1024
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"Transcriptomics",19354,1113
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"Proteomics",15015,1086
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"Copy_number",19359,1024
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"Mutations",18866,833

‎docs/_data/figshare_latest.yml

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article_link: https://figshare.com/articles/dataset/CODERData0_0_22/25537288
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article_link: https://figshare.com/articles/dataset/CODERData0_1_29/25935544
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file_download:
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beataml_drugs.tsv.gz: https://ndownloader.figshare.com/files/44184881
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beataml_experiments.csv.gz: https://ndownloader.figshare.com/files/44184929

‎docs/_data/hcmi_table.csv

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"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
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"Transcriptomics",19490,396
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"Mutations",16915,289
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"Copy_number",38879,282
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"Transcriptomics",19298,479
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"Mutations",17702,368
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"Copy_number",19316,350

‎docs/_data/mpnst_table.csv

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"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
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"Transcriptomics",9809,35
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"Copy_number",27985,30
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"Mutations",13409,29
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"Transcriptomics",5530,35
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"Copy_number",19309,32
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"Mutations",13343,29
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"Proteomics",9224,6

‎docs/_data/stats.yml

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beataml:
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cancer_types: 1
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drugs: 151
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genes: 19059
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samples: 1022
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broad_sanger:
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cell_lines: 204
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drugs: 57717
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genes: 25480
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samples: 1861
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cancer_types: 106
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samples: 2053
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drugs: 56082
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transcriptomics: 1697
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proteomics: 1008
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mutations: 1729
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copy_number: 1790
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cptac:
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cancer_types: 10
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drugs: 0
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genes: 38428
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samples: 1139
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drugs: 0
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transcriptomics: 1113
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proteomics: 1086
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mutations: 833
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copy_number: 1024
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hcmi:
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cancer_types: 29
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samples: 758
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drugs: 0
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genes: 39098
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samples: 909
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transcriptomics: 396
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proteomics: 0
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mutations: 289
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copy_number: 282
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beataml:
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cancer_types: 1
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samples: 1022
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drugs: 163
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transcriptomics: 707
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proteomics: 210
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mutations: 871
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copy_number: 0
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mpnst:
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cancer_types: 1
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drugs: 25
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genes: 32003
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samples: 50
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drugs: 25
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transcriptomics: 35
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proteomics: 6
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mutations: 29
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copy_number: 32

‎docs/assets/stats/Fig6_Sample_Summary.png

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‎docs/assets/stats/beataml_circos.png

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