Skip to content

Commit bc28a7a

Browse files
committed
Updating All site pages and links and counts and tables with latest data
1 parent bb95e02 commit bc28a7a

17 files changed

+643
-63
lines changed

.github/workflows/main.yml

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -3,9 +3,7 @@ name: CI
33
on:
44
push:
55
branches:
6-
- builder_branch_JJ
7-
- docs_update_4_5_24
8-
- doc_update_4_23_24
6+
- docker-build-multi
97
# Allows you to run this workflow manually from the Actions tab
108
workflow_dispatch:
119

docs/_data/beataml_table.csv

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
11
"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
2-
"Transcriptomics",18306,707
3-
"Proteomics",7356,210
4-
"Mutations",3454,871
2+
"Transcriptomics",15029,707
3+
"Proteomics",7267,210
4+
"Mutations",3403,871

docs/_data/broad_sanger_table.csv

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
2-
"Transcriptomics",37290,1697
3-
"Proteomics",12936,1008
4-
"Copy_number",24766,1790
5-
"Mutations",21658,1729
2+
"Transcriptomics",19335,1697
3+
"Proteomics",12777,1008
4+
"Copy_number",19210,1790
5+
"Mutations",20394,1729

docs/_data/cptac_table.csv

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
2-
"Transcriptomics",38406,1113
3-
"Proteomics",15273,1086
4-
"Copy_number",38394,1024
2+
"Transcriptomics",19354,1113
3+
"Proteomics",15015,1086
4+
"Copy_number",19359,1024
55
"Mutations",18866,833

docs/_data/figshare_latest.yml

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
1-
article_link: https://figshare.com/articles/dataset/CODERData0_0_22/25537288
1+
article_link: https://figshare.com/articles/dataset/CODERData0_1_29/25935544
22
file_download:
33
beataml_drugs.tsv.gz: https://ndownloader.figshare.com/files/44184881
44
beataml_experiments.csv.gz: https://ndownloader.figshare.com/files/44184929

docs/_data/hcmi_table.csv

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
11
"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
2-
"Transcriptomics",19490,396
3-
"Mutations",16915,289
4-
"Copy_number",38879,282
2+
"Transcriptomics",19298,479
3+
"Mutations",17702,368
4+
"Copy_number",19316,350

docs/_data/mpnst_table.csv

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,5 @@
11
"Dataset","Unique_Entrez_IDs","Unique_Sample_IDs"
2-
"Transcriptomics",9809,35
3-
"Copy_number",27985,30
4-
"Mutations",13409,29
2+
"Transcriptomics",5530,35
3+
"Copy_number",19309,32
4+
"Mutations",13343,29
5+
"Proteomics",9224,6

docs/_data/stats.yml

Lines changed: 31 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -1,25 +1,41 @@
1-
beataml:
2-
cancer_types: 1
3-
drugs: 151
4-
genes: 19059
5-
samples: 1022
1+
62
broad_sanger:
7-
cell_lines: 204
8-
drugs: 57717
9-
genes: 25480
10-
samples: 1861
3+
cancer_types: 106
4+
samples: 2053
5+
drugs: 56082
6+
transcriptomics: 1697
7+
proteomics: 1008
8+
mutations: 1729
9+
copy_number: 1790
1110
cptac:
1211
cancer_types: 10
13-
drugs: 0
14-
genes: 38428
1512
samples: 1139
13+
drugs: 0
14+
transcriptomics: 1113
15+
proteomics: 1086
16+
mutations: 833
17+
copy_number: 1024
1618
hcmi:
1719
cancer_types: 29
20+
samples: 758
1821
drugs: 0
19-
genes: 39098
20-
samples: 909
22+
transcriptomics: 396
23+
proteomics: 0
24+
mutations: 289
25+
copy_number: 282
26+
beataml:
27+
cancer_types: 1
28+
samples: 1022
29+
drugs: 163
30+
transcriptomics: 707
31+
proteomics: 210
32+
mutations: 871
33+
copy_number: 0
2134
mpnst:
2235
cancer_types: 1
23-
drugs: 25
24-
genes: 32003
2536
samples: 50
37+
drugs: 25
38+
transcriptomics: 35
39+
proteomics: 6
40+
mutations: 29
41+
copy_number: 32
-2.61 KB
Loading

docs/assets/stats/beataml_circos.png

12.5 KB
Loading

0 commit comments

Comments
 (0)