Merge pull request #354 from PNNL-CompBio/build_updates

Adding all datasets to mapping scripts.

Author: jjacobson95

scripts/map_improve_drug_ids.py

@@ -369,7 +369,7 @@ def main():
                         help='Build date in YYYY-MM-DD. Default=now.')
     parser.add_argument('--version', required=True,
                         help='Build version. Must be unique per build.')
-    parser.add_argument('--datasets', default='gdscv1,broad_sanger,ccle,ctrpv2,fimm,gcsi,gdscv2,nci60,prism,beataml,mpnst,mpnstpdx',
+    parser.add_argument('--datasets', default='gdscv1,ccle,ctrpv2,fimm,gcsi,gdscv2,nci60,prism,beataml,mpnst,mpnstpdx,pancpdo,bladderpdo',
                         help='Comma-separated list of datasets.')
     parser.add_argument('--local_dir', default='data',
                         help='Directory containing TSV files.')

scripts/map_improve_sample_ids.py

@@ -412,7 +412,7 @@ def main():
                         help='Build date in YYYY-MM-DD. Default=now.')
     parser.add_argument('--version', required=True,
                         help='Build version. Must be unique per build.')
-    parser.add_argument('--datasets', default='ccle,ctrpv2,fimm,gcsi,gdscv1,gdscv2,nci60,prism,hcmi,beataml,cptac,mpnst,mpnstpdx',
+    parser.add_argument('--datasets', default='ccle,ctrpv2,fimm,gcsi,gdscv1,gdscv2,nci60,prism,hcmi,beataml,cptac,mpnst,mpnstpdx,pancpdo,bladderpdo',
                         help='Comma-separated list of datasets, e.g., beataml,ccle')
     parser.add_argument('--local_dir', default='data',
                         help='Directory containing all CSV/TSV files.')