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lines changed Original file line number Diff line number Diff line change @@ -26,8 +26,37 @@ please see the [schema description](schema/README.md).
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## Building the data package
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- The data package is currently assembled via continuous automation,
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+ We have created a build script that executes each step of the build process to enable the creation of a ` local ` folder with all the requisite folders.
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+ The build requires Python as well as Docker to be installed.
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+ To build the docker images and run them, simply run (though this will take a while!):
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+ ```
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+ python build/build_all.py --all
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+ ```
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+
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+ To only build the docker files:
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+ ```
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+ python build/build_all.py --docker
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+ ```
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+
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+ Then to build the reference files (after dockers have been built):
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+ ```
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+ python build/build_all.py --samples
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+ python build/build_all.py --drugs
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+ ```
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+ Once the sample files have been created, we can collect the omics measurements:
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+ ```
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+ python build/build_all.py --omics
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+ ```
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+
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+ Once the drugs file and samples have been created, we can refit the curves:
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+ ```
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+ python build/build_all.py --exp
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+ ```
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+ Note: this will not build the python package, just generate the data!
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## Data Source Reference List
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