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fixed missing comma
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build/mpnst/00_sample_gen.R

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -37,7 +37,7 @@ tumorTable<-manifest|>
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##then create samples for the PDX
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sampTable<-manifest|>
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dplyr::select(c(common_name='Sample',MicroTissueDrugFolder))|>
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dplyr::mutate(other_id_source='NF Data Portal'other_names='',cancer_type="Malignant peripheral nerve sheath tumor",species='Human',model_type='patient derived xenograft')|>
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dplyr::mutate(other_id_source='NF Data Portal',other_names='',cancer_type="Malignant peripheral nerve sheath tumor",species='Human',model_type='patient derived xenograft')|>
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tidyr::unite(col='other_id',c('common_name','model_type'),sep=' ',remove=FALSE)
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