fix to code

Author: sgosline

build/broad_sanger/04-drug_dosage_and_curves.py

@@ -47,7 +47,7 @@
 allfiles=[a for a in os.listdir('./') if 'DoseResponse' in a]
 print(allfiles)
 for a in allfiles:
-    subprocess.run(['/opt/venv/bin/python','fit_curve.py','--input='+a+,'--output='+a])
+    subprocess.run(['/opt/venv/bin/python','fit_curve.py','--input='+a,'--output='+a])
 
 ###step 4c concatenate all files
 outfiles = [a for a in os.listdir("./") if ".0" in a]

build/mpnst/02_get_drug_data.R

@@ -70,6 +70,7 @@ alldrugs[which(alldrugs=='PD901')]<-'PD-0325901'
 
 print(paste(alldrugs,collapse=','))
 
+
 ##copy old drug to new drug
 olddrugs<-do.call(rbind,lapply(unique(unlist(strsplit(olddrugfiles,split=','))),function(x) read.table(x)))
 olddrugs<-unique(olddrugs)