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small fix to experiment file
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build/broad_sanger/04-drug_dosage_and_curves.py

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -24,6 +24,10 @@
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samplefile = opts.samplefile
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drugfile = opts.dfile
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cmd = 'python 04b-nci60-updated.py --sampleFile '+samplefile+' --drugFile '+drugfile
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print(cmd)
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os.system(cmd)
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####step 4a - get dose response data
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cmd = 'Rscript 04a-drugResponseData.R '+samplefile+' '+drugfile+' CTRPv2,FIMM,GDSC'
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print(cmd)
@@ -33,7 +37,6 @@
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print(cmd)
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os.system(cmd)
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cmd = 'python 04b-nci60-updated.py --sampleFile '+samplefile+' --drugFile '+drugfile
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#cmd = 'Rscript 04a-drugResponseData.R '+samplefile+' '+drugfile+' NCI60'
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#print(cmd)

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