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Update CI workflow and dependencies for Python 3.12 and 3.13 #12

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Merged
pgleeson merged 7 commits into from
May 19, 2026
Merged

Update CI workflow and dependencies for Python 3.12 and 3.13 #12

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4cfcdac
Update non-omv.yml
pgleeson Jun 13, 2025
e46d6e9
ensure latest numpy
pgleeson Jun 13, 2025
e48e9bd
Better dep installs
pgleeson Jun 13, 2025
f0908f1
Update CI workflow to remove PyNEST:3.4
pgleeson Nov 12, 2025
570ce26
Update GitHub Actions to use latest versions
pgleeson Mar 21, 2026
25fd5b6
Update Python version and actions in CI workflow
pgleeson May 19, 2026
6cb342f
test on py 3.12 & 3.13
pgleeson May 19, 2026
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12 changes: 7 additions & 5 deletions .github/workflows/non-omv.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -14,27 +14,29 @@ jobs:
strategy:
fail-fast: false
matrix:
python-version: [ 3.9, "3.10", "3.11"]
python-version: [ "3.12", "3.13" ]

steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
uses: actions/setup-python@v6
with:
python-version: ${{ matrix.python-version }}

- name: Install OMV
run: |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation

#pip install 'numpy<=1.23.0' # see https://github.com/OpenSourceBrain/osb-model-validation/issues/91

pip install 'numpy==2.2.6' # TODO: remove when pynn v0.12 used!
pip install scipy sympy matplotlib "cython<3.1.0" pandas tables

- name: Test some scripts
run: |
pip install pyneuroml
omv install PyNN
./regenerate.sh
omv all -V

- name: OMV final version info
run: |
Expand Down
16 changes: 7 additions & 9 deletions .github/workflows/omv-ci.yml
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Expand Up @@ -14,26 +14,24 @@ jobs:
strategy:
fail-fast: false
matrix:
python-version: [ 3.8, "3.10" ]
engine: [ PyNEST, "PyNEST:3.4", "PyNEST:3.5", PyNN_Nest, PyNN_NEURON, PyNN_Brian2, PyNN_NeuroML, jNeuroML_validate, jNeuroML, jNeuroML_NEURON ]
exclude:
- python-version: 3.8
engine: PyNN_Brian2
python-version: [ "3.12", "3.13" ]
engine: [ PyNEST, "PyNEST:3.5", PyNN_Nest, PyNN_NEURON, PyNN_Brian2, PyNN_NeuroML, jNeuroML_validate, jNeuroML, jNeuroML_NEURON ]

steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
uses: actions/setup-python@v6
with:
python-version: ${{ matrix.python-version }}

- name: Install OMV
run: |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation
pip install scipy sympy matplotlib cython pandas tables

#pip install 'numpy<=1.23.0' # see https://github.com/OpenSourceBrain/osb-model-validation/issues/91
pip install 'numpy==2.2.6' # TODO: remove when pynn v0.12 used!
pip install scipy sympy matplotlib "cython<3.1.0" pandas tables


- name: Run OMV tests on engine ${{ matrix.engine }}
run: |
Expand Down