add meta_path

Author: rettigl

tutorial/4_hextof_workflow.ipynb

@@ -31,6 +31,8 @@
    },
    "outputs": [],
    "source": [
+    "%load_ext autoreload\n",
+    "%autoreload 2\n",
     "from typing import List\n",
     "from pathlib import Path\n",
     "import os\n",
@@ -68,11 +70,13 @@
     "beamtime_dir = \"/asap3/flash/gpfs/pg2/2023/data/11019101\" # on Maxwell\n",
     "if os.path.exists(beamtime_dir) and os.access(beamtime_dir, os.R_OK):\n",
     "    path = beamtime_dir + \"/raw/hdf/offline/fl1user3\"\n",
+    "    meta_path = beamtime_dir + \"/shared\"\n",
     "    buffer_path = \"Gd_W110/processed/\"\n",
     "else:\n",
     "    # data_path can be defined and used to store the data in a specific location\n",
     "    dataset.get(\"Gd_W110\") # Put in Path to a storage of at least 10 GByte free space.\n",
     "    path = dataset.dir\n",
+    "    meta_path = path\n",
     "    buffer_path = path + \"/processed/\""
    ]
   },
@@ -167,7 +171,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "sp = SedProcessor(runs=[44762], config=config_override, system_config=config_file, collect_metadata=False, force_recreate=True)\n",
+    "sp = SedProcessor(runs=[44762], config=config_override, system_config=config_file, collect_metadata=False)\n",
     "# You can set collect_metadata=True if the scicat_url and scicat_token are defined"
    ]
   },
@@ -871,7 +875,7 @@
    "source": [
     "from sed.core.config import load_config\n",
     "import numpy as np\n",
-    "metadata = load_config(path + \"/44824_20230324T060430.json\")\n",
+    "metadata = load_config(meta_path + \"/44824_20230324T060430.json\")\n",
     "\n",
     "# Fix metadata\n",
     "metadata[\"scientificMetadata\"][\"Laser\"][\"wavelength\"][\"value\"] = float(metadata[\"scientificMetadata\"][\"Laser\"][\"wavelength\"][\"value\"][:-2])\n",