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<!DOCTYPE html>
<html class="writer-html5" lang="en" >
<head>
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<link rel="shortcut icon" href="./img/favicon.ico" />
<title>OLC Redmine Automator</title>
<link rel="stylesheet" href="./css/theme.css" />
<link rel="stylesheet" href="./css/theme_extra.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/styles/github.min.css" />
<script src="./js/jquery-3.6.0.min.js" defer></script>
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<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/highlight.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
</head>
<body class="wy-body-for-nav" role="document">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side stickynav">
<div class="wy-side-scroll">
<div class="wy-side-nav-search">
<a href="./." class="icon icon-home"> OLC Redmine Automator
</a><div role="search">
<form id ="rtd-search-form" class="wy-form" action="./search.html" method="get">
<input type="text" name="q" placeholder="Search docs" title="Type search term here" />
</form>
</div>
</div>
<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<ul>
<li class="toctree-l1"><a class="reference internal" href="./.">Home</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="./getting_started/">Getting Started</a>
</li>
</ul>
<p class="caption"><span class="caption-text">Data</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="./data/external_retrieve/">External Retrieve</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./data/report_retrieve/">Report Retrieve</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./data/sra_upload/">SRA Upload</a>
</li>
</ul>
<p class="caption"><span class="caption-text">Analysis</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="./analysis/amrsummary/">AMRsummary</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/autoclark/">AutoCLARK</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/confindr/">ConFindr</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/cowsnphr/">COWSNPhR</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/closerelatives/">CloseRelatives</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/eCGF/">eCGF</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/ectyper/">ECTyper</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/diversitree/">DiversiTree</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/geneseekr/">GeneSeekr</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/intimintyper/">IntiminTyper</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/mobsuite/">MobSuite</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/neartree/">NearTree</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/plasmidborneidentity/">PlasmidBorneIdentity</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/pointfinder/">PointFinder</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/primerfinder/">PrimerFinder</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/prokka/">Prokka</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/psortb/">PSORTb</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/resfinder/">ResFinder</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/roary/">Roary</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/sipprverse/">sipprverse</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/snvphyl/">SNVPhyl</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/staramr/">staramr</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/strainmash/">StrainMash</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./analysis/wgsassembly/">WGS Assembly</a>
</li>
</ul>
<p class="caption"><span class="caption-text">Internal Use</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="./internal_only/merge/">Merge</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="./troubleshooting/">Troubleshooting</a>
</li>
</ul>
<p class="caption"><span class="caption-text">Tutorials</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="./tutorials/create_environment/">Create Environment</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./tutorials/create_pages/">Create Pages</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./tutorials/edit_pages/">Edit Pages</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="./tutorials/publish_changes/">Publish Changes</a>
</li>
</ul>
</div>
</div>
</nav>
<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
<nav class="wy-nav-top" role="navigation" aria-label="Mobile navigation menu">
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<a href="./.">OLC Redmine Automator</a>
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<ul class="wy-breadcrumbs">
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<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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<h1 id="search">Search Results</h1>
<form id="content_search" action="search.html">
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<input name="q" id="mkdocs-search-query" type="text" class="search_input search-query ui-autocomplete-input" placeholder="Search the Docs" autocomplete="off" autofocus title="Type search term here">
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