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Add the flye option to reduce the coverage of the datasets #57

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Thomieh73 opened this issue Jan 24, 2025 · 1 comment
Open

Add the flye option to reduce the coverage of the datasets #57

Thomieh73 opened this issue Jan 24, 2025 · 1 comment

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@Thomieh73
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Thomieh73 commented Jan 24, 2025

Use the options:

--genome-size 3m --> should be clear for the genome size
--asm-coverage 200 --> to reduce the largest datasets for the initial assembly.

Also change what kind of reads are use
Change flag : --nano-raw to --nano-hq

and make a workflow with error correction that generate a fasta file and use the flag: --nano-corr

@Thomieh73
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add these as parameters to the main input file.

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