rebase.py

Author: Noonanav

Diff for: rebase.py

@@ -0,0 +1,26 @@
+import re
+import regex
+import json
+
+# f = open('rebase.txt')
+# file = (f.read())
+#
+# enz_list = []
+#
+# name = regex.finditer(r'<1>.*', file)
+#
+# for i in name:
+#     org = regex.search(r'<3>.*', file[i.end():])
+#     site = regex.search(r'<5>.*', file[i.end():])
+#     typ = regex.search(r'<8>.*', file[i.end():])
+#     enzyme = [org.group(0)[3:], i.group(0)[3:], site.group(0)[3:], typ.group(0)[3:]]
+#     enz_list.append(enzyme)
+#
+# open('./enz_list.json', 'w').write(json.dumps(enz_list))
+#
+with open('enz_list.json') as data_file:
+	enz_list = json.load(data_file)
+# #
+for i in enz_list:
+    if 'NIES-39' in i[0]:
+        print i[3]