README

Code supporting our paper
"Comprehensive multiplexed immune profiling of the ductal carcinoma in situ immune microenvironment regarding subsequent ipsilateral invasive breast cancer risk"
published in the British Journal of Cancer (2022): https://doi.org/10.1038/s41416-022-01888-2.


Steps to make the plots:
 1. Install R and the required packages. The exact version used are documented in `renv.lock`.
 2. Add the data files from https://doi.org/10.6084/m9.figshare.19698286 to the data directory.
 3. Run with `snakemake`.