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KazeemHamzatomarisgreat
KazeemHamzat
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omarisgreat
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Feature-IOPS-4001-Update-CodeSystem-mds-questiontag-genomics-to-align-with-MDS-v1.0.5 (#191)
* Update CodeSystem-Genomics-mds-questiontag Update CodeSystem-Genomics-mds-questiontag * Remove ValueSet-Genomics-mds-questiontag * Update Display names Update Display names * Update Observation Examples to MDS CodeSystem Tag Update Observation Examples with Meta Tag * Updaate Display Names for TR and PCI Updaate Display Names for Test Request and PCI(Patient clinical information) * Feedback Feedback * Update Observation-NeoplasticCell-Example.json * Update Observation-NeoplasticCellKayBurbridge-Example.json --------- Co-authored-by: Omar Khan <41755223+omarisgreat@users.noreply.github.com>
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‎CodeSystem/CodeSystem-Genomics-mds-questiontag.json‎

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‎Observation/Observation-AutisticBehaviour-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-AutisticBehaviour-Example",
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"meta": {
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"tag": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
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"code": "PCI-6",
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"display": "Patient clinical information - Phenotypic details"
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}
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]
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},
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"status": "final",
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"code": {
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"coding": [

‎Observation/Observation-BlastPercentage-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-BlastPercentage-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1015521000000107",
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"display": "Percentage blast cells"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-PatrickSammy-Example",
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"resourceType": "Observation",
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"id": "Observation-BlastPercentage-Example",
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"meta": {
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"tag": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
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"code": "PS-23",
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"display": "Primary Sample - Blasts %"
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}
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]
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},
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1015521000000107",
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"display": "Percentage blast cells"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-PatrickSammy-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"specimen": {
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"identifier": {
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
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"value": "RR81234",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "696B0"
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}
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},
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"specimen": {
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"identifier": {
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
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"value": "RR81234",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "696B0"
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}
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}
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}
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},
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"valueQuantity": {
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"value": 25,
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"unit": "%",
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"system": "http://unitsofmeasure.org",
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"code": "%"
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},
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"effectiveDateTime": "2023-08-29"
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}
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}
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},
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"valueQuantity": {
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"value": 25,
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"unit": "%",
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"system": "http://unitsofmeasure.org",
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"code": "%"
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},
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"effectiveDateTime": "2023-08-29"
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}

‎Observation/Observation-BlastPercentageWGSSample-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-BlastPercentageWGSSample-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1015521000000107",
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"display": "Percentage blast cells"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-PatrickSammy-Example",
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"resourceType": "Observation",
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"id": "Observation-BlastPercentageWGSSample-Example",
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"meta": {
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"tag": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
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"code": "PS-23",
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"display": "Primary Sample - Blasts %"
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}
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]
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},
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1015521000000107",
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"display": "Percentage blast cells"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-PatrickSammy-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"specimen": {
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"identifier": {
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
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"value": "RR81235",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "696B0"
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}
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},
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"specimen": {
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"identifier": {
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"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
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"value": "RR81235",
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"assigner": {
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/ods-organization-code",
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"value": "696B0"
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}
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}
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}
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},
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"valueQuantity": {
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"value": 25,
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"unit": "%",
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"system": "http://unitsofmeasure.org",
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"code": "%"
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},
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"effectiveDateTime": "2023-08-05"
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}
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}
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},
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"valueQuantity": {
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"value": 25,
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"unit": "%",
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"system": "http://unitsofmeasure.org",
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"code": "%"
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},
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"effectiveDateTime": "2023-08-05"
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}

‎Observation/Observation-Bruising-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-Bruising-Example",
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "308492005",
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"display": "Bruising"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-PatrickSammy-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"effectiveDateTime": "2023-09-03"
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"resourceType": "Observation",
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"id": "Observation-Bruising-Example",
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"meta": {
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"tag": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
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"code": "PCI-7",
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"display": "Patient clinical information - Symptoms"
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}
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]
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},
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "308492005",
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"display": "Bruising"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-PatrickSammy-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"effectiveDateTime": "2023-09-03"
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}

‎Observation/Observation-Cellularity-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-Cellularity-Example",
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"status": "final",
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"code": {
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"text": "Cellularity"
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},
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"subject": {
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"reference": "Patient/Patient-ZelmaHadjkiss-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307555"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "RA257630"
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}
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},
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "75540009",
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"display": "High"
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}
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]
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},
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"effectiveDateTime": "2023-09-08T10:00:00Z"
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"resourceType": "Observation",
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"id": "Observation-Cellularity-Example",
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"meta": {
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"tag": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
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"code": "PS-14",
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"display": "Primary Sample - Nucleated cell count"
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}
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]
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},
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1022461000000100",
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"display": "Nucleated red blood cell count"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-ZelmaHadjkiss-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307555"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "RA257630"
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}
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},
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "75540009",
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"display": "High"
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}
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]
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},
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"effectiveDateTime": "2023-09-08T10:00:00Z"
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}

‎Observation/Observation-CellularityKayBurbridge-Example.json‎

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{
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"resourceType": "Observation",
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"id": "Observation-CellularityKayBurbridge-Example",
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"status": "final",
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"code": {
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"text": "Cellularity"
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},
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"subject": {
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"reference": "Patient/Patient-KayBurbridge-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "699F01231423"
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}
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},
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "75540009",
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"display": "High"
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}
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]
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},
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"effectiveDateTime": "2023-11-01T11:00:00Z"
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"resourceType": "Observation",
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"id": "Observation-CellularityKayBurbridge-Example",
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"meta": {
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"tag": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
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"code": "PS-14",
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"display": "Primary Sample - Nucleated cell count"
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}
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]
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},
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"status": "final",
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"code": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "1022461000000100",
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"display": "Nucleated red blood cell count"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-KayBurbridge-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "8449303541"
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}
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},
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"specimen": {
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"identifier": {
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"system": "https://fhir.add.nhs.uk/Id/specimenId",
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"value": "699F01231423"
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}
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},
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "75540009",
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"display": "High"
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}
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]
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},
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"effectiveDateTime": "2023-11-01T11:00:00Z"
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}

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