Skip to content

Commit 798afe0

Browse files
omarisgreatomarisgreat
committed
Merge branch 'main' into Issue-2663
2 parents 1233096 + 550a206 commit 798afe0

25 files changed

+848
-17
lines changed

‎BodyStructure/BodyStructure-BodySiteLocationAbdomen-Example.json‎

Lines changed: 29 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,29 @@
1+
{
2+
"resourceType": "BodyStructure",
3+
"id": "BodyStructure-BodySiteLocationAbdomen-Example",
4+
"morphology": {
5+
"coding": [
6+
{
7+
"system": "http://snomed.info/sct",
8+
"code": "369755005",
9+
"display": "Multiple tumors (qualifier value)"
10+
}
11+
]
12+
},
13+
"location": {
14+
"coding": [
15+
{
16+
"system": "http://snomed.info/sct",
17+
"code": "818983003",
18+
"display": "Structure of abdominopelvic cavity and/or content of abdominopelvic cavity and/or anterior abdominal wall (body structure)"
19+
}
20+
]
21+
},
22+
"patient": {
23+
"reference": "Patient-DemeizaSeo-Example",
24+
"identifier": {
25+
"system": "https://fhir.nhs.uk/Id/nhs-number",
26+
"value": "9449306559"
27+
}
28+
}
29+
}

‎Bundle/UKCore-Bundle-MichaelJonesRequest-Example_minimal.json‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -158,7 +158,7 @@
158158
{
159159
"system": "http://snomed.info/sct",
160160
"code": "363418001",
161-
"display": "Malignant tumor of pancreas (disorder)"
161+
"display": "Malignant neoplasm of pancreas (disorder)"
162162
}
163163
]
164164
}

‎Bundle/UKCore-Bundle-MichaelJonesRequest-Example_v3_message.json‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -596,7 +596,7 @@
596596
{
597597
"system": "http://snomed.info/sct",
598598
"code": "363418001",
599-
"display": "Malignant tumor of pancreas (disorder)"
599+
"display": "Malignant neoplasm of pancreas (disorder)"
600600
}
601601
]
602602
}

‎CodeSystem/CodeSystem-Genomics-business-status.json‎

Lines changed: 5 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
22
"resourceType": "CodeSystem",
33
"id": "business-status-genomics",
44
"url": "https://fhir.nhs.uk/CodeSystem/business-status-genomics",
5-
"version": "0.4.0",
5+
"version": "0.4.1",
66
"name": "BusinessStatusGenomics",
77
"title": "Business Status Genomics",
88
"status": "draft",
@@ -112,6 +112,10 @@
112112
{
113113
"code": "reflex-confirmatory-test-complete",
114114
"display": "Reflex/Confirmatory Test Complete"
115+
},
116+
{
117+
"code": "other",
118+
"display": "other"
115119
}
116120
]
117121
}

‎CodeSystem/CodeSystem-Genomics-task-statusReason.json‎

Lines changed: 5 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
22
"resourceType": "CodeSystem",
33
"id": "task-statusReason-genomics",
44
"url": "https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics",
5-
"version": "0.3.0",
5+
"version": "0.3.1",
66
"name": "TaskStatusReasonGenomics",
77
"title": "Task StatusReason Genomics",
88
"status": "draft",
@@ -72,6 +72,10 @@
7272
{
7373
"code": "awaiting-order-detail",
7474
"display": "Awaiting Order Detail"
75+
},
76+
{
77+
"code": "other",
78+
"display": "other"
7579
}
7680
]
7781
}

‎Condition/Condition-AcuteMyeloidLeukaemia-Example.json‎

Lines changed: 38 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,38 @@
1+
{
2+
"resourceType": "Condition",
3+
"id": "Condition-AcuteMyeloidLeukaemia-Example",
4+
"clinicalStatus": {
5+
"coding": [
6+
{
7+
"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
8+
"code": "active",
9+
"display": "Active"
10+
}
11+
]
12+
},
13+
"verificationStatus": {
14+
"coding": [
15+
{
16+
"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
17+
"code": "provisional",
18+
"display": "Provisional"
19+
}
20+
]
21+
},
22+
"code": {
23+
"coding": [
24+
{
25+
"system": "http://snomed.info/sct",
26+
"code": "1162928000",
27+
"display": "Acute myeloid leukemia (morphologic abnormality)"
28+
}
29+
]
30+
},
31+
"subject": {
32+
"identifier": {
33+
"system": "https://fhir.nhs.uk/Id/nhs-number",
34+
"value": "9449307873"
35+
}
36+
},
37+
"recordedDate": "2023-09-05"
38+
}

‎Observation/Observation-BlastPercentageWGSSample-Example.json‎

Lines changed: 40 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,40 @@
1+
{
2+
"resourceType": "Observation",
3+
"id": "Observation-BlastPercentageWGSSample-Example",
4+
"status": "final",
5+
"code": {
6+
"coding": [
7+
{
8+
"system": "http://snomed.info/sct",
9+
"code": "1015521000000107",
10+
"display": "Percentage blast cells (observable entity)"
11+
}
12+
]
13+
},
14+
"subject": {
15+
"reference": "Patient/Patient-PatrickSammy-Example",
16+
"identifier": {
17+
"system": "https://fhir.nhs.uk/Id/nhs-number",
18+
"value": "9449307873"
19+
}
20+
},
21+
"specimen": {
22+
"identifier": {
23+
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
24+
"value": "RR81235",
25+
"assigner": {
26+
"identifier": {
27+
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
28+
"value": "696B0"
29+
}
30+
}
31+
}
32+
},
33+
"valueQuantity": {
34+
"value": 25,
35+
"unit": "%",
36+
"system": "http://unitsofmeasure.org",
37+
"code": "%"
38+
},
39+
"effectiveDateTime": "2023-08-05"
40+
}

‎Observation/Observation-NucleatedCellCountWGSSample-Example.json‎

Lines changed: 40 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,40 @@
1+
{
2+
"resourceType": "Observation",
3+
"id": "Observation-NucleatedCellCountWGSSample-Example",
4+
"status": "final",
5+
"code": {
6+
"coding": [
7+
{
8+
"system": "http://snomed.info/sct",
9+
"code": "1022461000000100",
10+
"display": "Nucleated red blood cell count"
11+
}
12+
]
13+
},
14+
"subject": {
15+
"reference": "Patient/Patient-PatrickSammy-Example",
16+
"identifier": {
17+
"system": "https://fhir.nhs.uk/Id/nhs-number",
18+
"value": "9449307873"
19+
}
20+
},
21+
"specimen": {
22+
"identifier": {
23+
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
24+
"value": "RR81235",
25+
"assigner": {
26+
"identifier": {
27+
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
28+
"value": "696B0"
29+
}
30+
}
31+
}
32+
},
33+
"valueQuantity": {
34+
"value": 10,
35+
"unit": "10^12/l",
36+
"system": "http://unitsofmeasure.org",
37+
"code": "10^12/L"
38+
},
39+
"effectiveDateTime": "2023-09-05"
40+
}

‎Observation/Observation-PatrickSammyNoBoneMarrowTransplant-Example.json‎

Lines changed: 31 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,31 @@
1+
{
2+
"resourceType": "Observation",
3+
"id": "Observation-PatrickSammyNoBoneMarrowTransplant-Example",
4+
"status": "final",
5+
"code": {
6+
"coding": [
7+
{
8+
"system": "http://snomed.info/sct",
9+
"code": "416128008",
10+
"display": "No history of procedure (situation)"
11+
}
12+
]
13+
},
14+
"valueCodeableConcept": {
15+
"coding": [
16+
{
17+
"system": "http://snomed.info/sct",
18+
"code": "445715009",
19+
"display": "Blood and marrow transplantation (qualifier value)"
20+
}
21+
]
22+
},
23+
"subject": {
24+
"reference": "Patient/Patient-PatrickSammy-Example",
25+
"identifier": {
26+
"system": "https://fhir.nhs.uk/Id/nhs-number",
27+
"value": "9449307873"
28+
}
29+
},
30+
"effectiveDateTime": "2023-09-05"
31+
}

‎Observation/Observation-PercentageMalignantNuclei-Example.json‎

Lines changed: 41 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,41 @@
1+
{
2+
"resourceType": "Observation",
3+
"id": "Observation-PercentageMalignantNuclei-Example",
4+
"status": "final",
5+
"code": {
6+
"coding": [
7+
{
8+
"system": "http://snomed.info/sct",
9+
"code": "1255076007",
10+
"display": "Percent of cell nuclei positive for proliferation marker protein Ki-67 in primary malignant neoplasm of stomach by immunohistochemistry (observable entity)"
11+
}
12+
]
13+
},
14+
"subject": {
15+
"reference": "Patient/Patient-DemeizaSeo-Example",
16+
"identifier": {
17+
"system": "https://fhir.nhs.uk/Id/nhs-number",
18+
"value": "9449306559"
19+
}
20+
},
21+
"specimen": {
22+
"reference":"Specimen/Specimen-SolidTumorDemeizaSeo-Example",
23+
"identifier": {
24+
"system": "https://fhir.add.nhs.uk/Id/specimenId",
25+
"value": "RA257631",
26+
"assigner": {
27+
"identifier": {
28+
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
29+
"value": "696B0"
30+
}
31+
}
32+
}
33+
},
34+
"valueQuantity": {
35+
"value": 25,
36+
"unit": "%",
37+
"system": "http://unitsofmeasure.org",
38+
"code": "%"
39+
},
40+
"effectiveDateTime": "2023-08-09"
41+
}

0 commit comments

Comments
 (0)