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Merge pull request #149 from NHSDigital/Issue-2660
Corrections to examples and profiles
2 parents 4006b1d + 9677511 commit 560e815

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29 files changed

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-105
lines changed

29 files changed

+299
-105
lines changed

‎Bundle/Bundle-NonWGSTestOrderForm-Example.json‎

Lines changed: 23 additions & 16 deletions
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@@ -273,7 +273,7 @@
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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"reference": "Condition/Condition-MonogenicHearingLoss-Example"
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},
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
@@ -335,11 +335,28 @@
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}
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},
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{
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"fullUrl": "http://example.org/fhir/Observation/Observation-DiseaseStatus-Example",
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"fullUrl": "http://example.org/fhir/Condition/Condition-MonogenicHearingLoss-Example",
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"resource": {
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"resourceType": "Observation",
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"id": "Observation-DiseaseStatus-Example",
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"status": "final",
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"resourceType": "Condition",
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"id": "Condition-MonogenicHearingLoss-Example",
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"clinicalStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
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"code": "inactive",
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"display": "inactive"
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}
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]
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},
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"verificationStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
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"code": "provisional",
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"display": "Provisional"
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}
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]
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},
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"code": {
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"coding": [
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{
@@ -356,21 +373,11 @@
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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},
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"effectiveDateTime": "2023-08-05",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "103310001",
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"display": "Patient not affected"
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}
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]
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}
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},
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"request": {
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"method": "POST",
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"url": "Observation"
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"url": "Condition"
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}
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},
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{

‎Bundle/Bundle-NonWGSTestOrderForm-Reanalysis-Example.json‎

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@@ -298,7 +298,7 @@
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"reference": "Observation/Observation-GenomicEthnicity-Example"
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},
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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"reference": "Condition/Condition-MonogenicHearingLoss-Example"
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},
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{
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"reference": "Observation/Observation-NoPregnancy-Example"
@@ -362,11 +362,28 @@
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}
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},
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{
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"fullUrl": "http://example.org/fhir/Observation/Observation-DiseaseStatus-Example",
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"fullUrl": "http://example.org/fhir/Condition/Condition-MonogenicHearingLoss-Example",
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"resource": {
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"resourceType": "Observation",
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"id": "Observation-DiseaseStatus-Example",
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"status": "final",
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"resourceType": "Condition",
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"id": "Condition-MonogenicHearingLoss-Example",
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"clinicalStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
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"code": "inactive",
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"display": "inactive"
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}
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]
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},
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"verificationStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
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"code": "provisional",
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"display": "Provisional"
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}
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]
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},
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"code": {
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"coding": [
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{
@@ -383,21 +400,11 @@
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307559"
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}
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},
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"effectiveDateTime": "2023-09-06",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "103310001",
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"display": "Patient not affected"
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}
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]
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}
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},
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"request": {
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"method": "POST",
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"url": "Observation"
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"url": "Condition"
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}
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},
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{

‎Bundle/Bundle-WGSTestOrderForm-Example.json‎

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Original file line numberDiff line numberDiff line change
@@ -267,7 +267,7 @@
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],
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"supportingInfo": [
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{
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"reference": "Observation/Observation-DiseaseStatus-Example"
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"reference": "Condition/Condition-MonogenicHearingLoss-Example"
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},
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{
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"reference": "Observation/Observation-GenomicEthnicity-Example"
@@ -344,17 +344,34 @@
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}
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},
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{
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"fullUrl": "http://example.org/fhir/Observation/Observation-DiseaseStatus-Example",
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"fullUrl": "http://example.org/fhir/Condition/Condition-MonogenicHearingLoss-Example",
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"resource": {
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"resourceType": "Observation",
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"id": "Observation-DiseaseStatus-Example",
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"status": "final",
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"resourceType": "Condition",
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"id": "Condition-MonogenicHearingLoss-Example",
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"clinicalStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
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"code": "inactive",
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"display": "inactive"
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}
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]
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},
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"verificationStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
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"code": "provisional",
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"display": "Provisional"
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}
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]
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},
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R193.4",
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"display": "Cystic renal disease",
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"code": "R67.2",
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"display": "Monogenic hearing loss",
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"version": "7"
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}
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]
@@ -365,21 +382,11 @@
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307946"
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}
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},
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"effectiveDateTime": "2023-08-05",
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"valueCodeableConcept": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "103310001",
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"display": "Patient not affected"
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}
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]
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}
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},
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"request": {
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"method": "POST",
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"url": "Observation"
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"url": "Condition"
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}
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},
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{

‎CapabilityStatement/CapabilityStatement-genomics-application.json‎

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@@ -1442,7 +1442,7 @@
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},
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{
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"type": "RelatedPerson",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSDigital-RelatedPerson-Genomics",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-RelatedPerson",
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"documentation": "Endpoints for interacting with RelatedPerson resources",
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"interaction": [
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{
@@ -1839,7 +1839,7 @@
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},
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{
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"type": "Composition",
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"profile": "http://hl7.org/fhir/StructureDefinition/Composition",
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Composition",
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"documentation": "For validation of Composition resources and allowing searches via chaining from the Bundle endpoint",
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"interaction": [
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{

‎CapabilityStatement/CapabilityStatement-genomics-requirements.json‎

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@@ -41,7 +41,7 @@
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},
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{
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"type": "Composition",
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"profile": "http://hl7.org/fhir/StructureDefinition/Composition"
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"profile": "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Composition"
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},
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{
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"type": "DocumentReference",

‎Condition/Condition-MonogenicHearingLoss-Example.json‎

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,39 @@
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{
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"resourceType": "Condition",
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"id": "Condition-MonogenicHearingLoss-Example",
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"clinicalStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-clinical",
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"code": "inactive",
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"display": "inactive"
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}
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]
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},
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"verificationStatus": {
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"coding": [
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{
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"system": "http://terminology.hl7.org/CodeSystem/condition-ver-status",
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"code": "provisional",
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"display": "Provisional"
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}
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]
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},
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"code": {
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"coding": [
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{
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"system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
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"code": "R67.2",
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"display": "Monogenic hearing loss",
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"version": "7"
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}
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]
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},
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"subject": {
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"reference": "Patient/Patient-MeirLieberman-Example",
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/nhs-number",
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"value": "9449307873"
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}
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}
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}

‎Observation/Observation-DiseaseStatus-Example.json‎

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