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Edits to profiles to conform to metadata guidance
1 parent 94090b7 commit 35725e1

26 files changed

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‎CapabilityStatement/CapabilityStatement-genomics-application.json‎

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},
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{
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"type": "Condition",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Condition-mCODE",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Condition-GenomicsmCODE",
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"documentation": "Endpoints for interacting with Condition resources",
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"interaction": [
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{
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},
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{
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"type": "BodyStructure",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-BodyStructure-mCODE",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-BodyStructure-GenomicsmCODE",
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"documentation": "Endpoints for interacting with BodyStructure resources",
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"interaction": [
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{

‎CapabilityStatement/CapabilityStatement-genomics-requirements.json‎

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},
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{
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"type": "Condition",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Condition-mCODE"
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Condition-GenomicsmCODE"
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},
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{
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"type": "ResearchSubject",
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},
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{
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"type": "BodyStructure",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-BodyStructure-mCODE"
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-BodyStructure-GenomicsmCODE"
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},
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{
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"type": "Provenance",

‎StructureDefinition/Extension-Genomic-Patient-Role.json‎

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"resourceType": "StructureDefinition",
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"id": "Extension-Genomic-Patient-Role",
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"url": "https://fhir.nhs.uk/England/StructureDefinition/Extension-Genomic-Patient-Role",
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"version": "0.1.0",
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"version": "0.2.0",
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"name": "ExtensionGenomicPatientRole",
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"title": "Extension Genomic Patient Role",
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"status": "draft",
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"date": "2025-12-17",
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"status": "active",
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"date": "2026-04-16",
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"publisher": "NHS England",
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"contact": [
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{

‎StructureDefinition/Extension-GenomicTest-ParticipantCount.json‎

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"resourceType": "StructureDefinition",
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"id": "Extension-GenomicTest-ParticipantCount",
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"url": "https://fhir.nhs.uk/England/StructureDefinition/Extension-GenomicTest-ParticipantCount",
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"version": "0.1.0",
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"version": "0.2.0",
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"name": "ExtensionGenomicTestParticipantCount",
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"title": "Extension Genomic Test ParticipantCount",
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"status": "draft",
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"date": "2026-03-26",
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"status": "active",
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"date": "2026-04-16",
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"publisher": "NHS England",
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"contact": [
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{

‎StructureDefinition/Extension-GenomicTestCode-Version.json‎

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{
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"resourceType": "StructureDefinition",
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"id": "Extension-GenomicTestCode-Version",
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"url": "https://fhir.nhs.uk/England/StructureDefinition/Extension-GenomicTestCode-Version",
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"version": "0.1.0",
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"name": "ExtensionGenomicTestCodeVersion",
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"title": "Extension Genomic Test Code Version",
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"status": "draft",
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"date": "2025-10-21",
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"publisher": "NHS England",
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"contact": [
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{
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"name": "NHS England",
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"telecom": [
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"resourceType": "StructureDefinition",
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"id": "Extension-GenomicTestCode-Version",
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"url": "https://fhir.nhs.uk/England/StructureDefinition/Extension-GenomicTestCode-Version",
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"version": "0.2.0",
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"name": "ExtensionGenomicTestCodeVersion",
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"title": "Extension Genomic Test Code Version",
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"status": "active",
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"date": "2026-04-16",
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"publisher": "NHS England",
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"contact": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net"
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"name": "NHS England",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work",
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"rank": 1
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}
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]
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}
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]
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}
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],
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"description": "An Extension used to record the version of the Genomic Test being ordered. E.g, \"system\": \"https://nhsgms-panelapp.genomicsengland.co.uk\", code\": \"R31\",valueDecimal\": 7.0",
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"purpose": "This is a use case from Genomics, used to record the test code version of the Genomic Test being ordered. ",
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"copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"fhirVersion": "4.0.1",
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"kind": "complex-type",
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"abstract": false,
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"context": [
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{
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"type": "element",
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"expression": "Coding"
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}
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],
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"type": "Extension",
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"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
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"derivation": "constraint",
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"differential": {
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"element": [
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{
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"id": "Extension.extension",
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"path": "Extension.extension",
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"max": "0"
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},
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{
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"id": "Extension.url",
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"path": "Extension.url",
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"fixedUri": "https://fhir.nhs.uk/England/StructureDefinition/Extension-GenomicTestCode-Version"
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},
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{
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"type": [
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{
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"code": "decimal"
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}
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],
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"description": "An Extension used to record the version of the Genomic Test being ordered. E.g, \"system\": \"https://nhsgms-panelapp.genomicsengland.co.uk\", code\": \"R31\",valueDecimal\": 7.0",
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"purpose": "This is a use case from Genomics, used to record the test code version of the Genomic Test being ordered. ",
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"copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"fhirVersion": "4.0.1",
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"kind": "complex-type",
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"abstract": false,
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"context": [
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{
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"type": "element",
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"expression": "Coding"
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}
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],
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"type": "Extension",
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"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
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"derivation": "constraint",
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"differential": {
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"element": [
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{
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"id": "Extension.extension",
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"path": "Extension.extension",
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"max": "0"
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},
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{
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"id": "Extension.url",
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"path": "Extension.url",
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"fixedUri": "https://fhir.nhs.uk/England/StructureDefinition/Extension-GenomicTestCode-Version"
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},
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{
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"id": "Extension.value[x]",
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"path": "Extension.value[x]",
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"type": [
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{
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"code": "decimal"
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}
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]
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}
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]
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}
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]
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}
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}
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}

‎StructureDefinition/NHSEngland-AuditEvent-GenomicsPARS.json‎

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{
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"resourceType": "StructureDefinition",
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"id": "NHSEngland-AuditEvent-GenomicsPARS",
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"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-AuditEvent-GenomicsPARS",
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"version": "0.3.0",
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"name": "NHSEngland_AuditEvent_GenomicsPARS",
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"status": "draft",
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"title": "NHSEngland AuditEvent GenomicsPARS",
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"status": "active",
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"date": "2026-04-16",
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"publisher": "NHS England",
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"contact": [
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{
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"name": "NHS England",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work",
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"rank": 1
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}
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]
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}
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],
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"description": "This profile defines the Genomics constraints and extensions on the NHS England Patient Audit and Record Service FHIR resource [PARS AuditEvent](https://fhir.nhs.uk/England/StructureDefinition/England-AuditEvent-PARS).",
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"purpose": "Created by the central GMS infrastructure on any CRUD event.\r\n\r\nCan be searched on for auditability and obtaining status history for Tasks (as an alternative to the Task _history option).\r\n\r\nIt is not expected or permitted that a client system would update or post AuditEvents to the central service.\r\n\r\nAuditEvents are expected to be created for any CRUD events which affect resources on the server. Where resources do not exist on the server, e.g. empty SearchSets or failed POSTs, no AuditEvents will be created. Failed updates may still trigger creation of AuditEvent resources but the outcome.code will record that the event was unsuccessful.\r\n\r\nAuditEvents for resources created by the server will record the server identity within the who element.\r\n\r\nThe below profile is therefore provided to support parsing for clients if returned through a GET request.",
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"copyright": "Copyright © 2026+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"fhirVersion": "4.0.1",
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"kind": "resource",
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"abstract": false,

‎StructureDefinition/NHSEngland-BodyStructure-GenomicsmCODE.json‎

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{
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"resourceType": "StructureDefinition",
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"id": "NHSEngland-BodyStructure-GenomicsmCODE",
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"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-BodyStructure-GenomicsmCODE",
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"version": "0.3.0",
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"name": "NHSEngland_BodyStructure_GenomicsmCODE",
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"title": "NHSEngland BodyStructure GenomicsmCODE",
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"status": "active",
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"date": "2026-04-16",
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"publisher": "NHS England",
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"contact": [
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{
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"name": "NHS England",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work",
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"rank": 1
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}
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]
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}
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],
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"description": "This profile defines the Genomics constraints and extensions on the mCODE FHIR resource [Tumour BodyStructure](http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-tumor).",
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"purpose": "Only required where additional elements regarding the body site need to be captured, e.g. histology/morphology. If a simple SNOMED CT anatomical location code is sufficient, this SHOULD be captured in Specimen.bodySite.\r\n\r\nFor metastatic sites vs. primary, the Condition resource SHOULD be used instead, following guidance from the mCode FHIR IG",
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"copyright": "Copyright © 2026+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"fhirVersion": "4.0.1",
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"kind": "resource",
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"abstract": false,
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"type": "BodyStructure",
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"baseDefinition": "http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-tumor",
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"derivation": "constraint",
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"differential": {
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"element": [
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{
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"id": "BodyStructure.morphology",
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"path": "BodyStructure.morphology",
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"definition": "SHALL be provided where relevant. SHOULD use SNOMED CT encoding. SHOULD use a code under the `14799000 | Neoplasm, metastatic (morphologic abnormality)` concept if the sample has been collected from a metastatic site, as opposed to primary."
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},
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{
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"id": "BodyStructure.location",
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"path": "BodyStructure.location",
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"definition": "SHALL be provided where relevant. SHOULD use SNOMED CT encoding. Equivalent to Topography when used in conjunction with locationQualifier."
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},
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{
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"id": "BodyStructure.locationQualifier",
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"path": "BodyStructure.locationQualifier",
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"definition": "SHALL be provided where relevant. SHOULD use SNOMED CT encoding."
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},
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{
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"id": "BodyStructure.patient",
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"path": "BodyStructure.patient",
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"type": [
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{
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"code": "Reference",
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"targetProfile": [
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"https://fhir.nhs.uk/StructureDefinition/NHSEngland-Patient-Genomics",
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"http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-cancer-patient"
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],
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"aggregation": [
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"referenced",
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"bundled"
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]
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}
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]
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}
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]
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}
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}

‎StructureDefinition/NHSEngland-BodyStructure-mCODE.json‎

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‎StructureDefinition/NHSEngland-Bundle-Genomics.json‎

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{
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"resourceType": "StructureDefinition",
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"id": "NHSEngland-Bundle-Genomics",
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"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Bundle-Genomics",
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"version": "0.3.0",
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"name": "NHSEngland_Bundle_Genomics",
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"status": "draft",
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"title": "NHSEngland Bundle Genomics",
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"status": "active",
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"date": "2026-04-16",
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"publisher": "NHS England",
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"contact": [
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{
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"name": "NHS England",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work",
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"rank": 1
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}
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]
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}
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],
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"description": "This profile defines the Genomics constraints and extensions on the International FHIR resource [Bundle](http://hl7.org/fhir/StructureDefinition/Bundle).",
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"purpose": "Bundles within Genomics will be limited to Transactions for Test orders and updates; Transaction-responses for responses to transactions (housing sets of OperationOutcomes); or Searchsets, returned in response to search queries.",
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"copyright": "Copyright © 2026+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"fhirVersion": "4.0.1",
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"kind": "resource",
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"abstract": false,

‎StructureDefinition/NHSEngland-Composition-GenomicsEULabReport.json‎

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{
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"resourceType": "StructureDefinition",
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"id": "NHSEngland-Composition-GenomicsEULabReport",
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"url": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-Composition-GenomicsEULabReport",
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"version": "0.3.0",
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"name": "NHSEngland_Composition_GenomicsEULabReport",
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"status": "draft",
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"title": "NHSEngland Composition GenomicsEULabReport",
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"status": "active",
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"date": "2026-04-16",
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"publisher": "NHS England",
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"contact": [
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{
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"name": "NHS England",
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"telecom": [
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{
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"system": "email",
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"value": "interoperabilityteam@nhs.net",
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"use": "work",
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"rank": 1
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}
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]
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}
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],
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"description": "This profile defines the Genomics constraints and extensions on the EU Lab FHIR resource [EU Lab Composition](http://hl7.eu/fhir/laboratory/StructureDefinition/Composition-eu-lab).",
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"purpose": "There are two use cases for Compositions within Genomics.\r\n\r\nFor Order Management, Compositions will be limited to documents generated by the central broker for capturing snapshots of Test orders and results in order to maintain historical accuracy, as per the DocumentReference generate OperationDefinition. These will typically form the first entry of a Document Bundle and as such will not be exposed via their own endpoint, nor allow creates, reads or updates from client systems on the resource itself.\r\n\r\nTo support cross border data sharing Compositions MAY be aligned to the HL7 EU Lab Composition profile as a wrap around structured reports.\r\n\r\nFor the Unified Genomic Record, Compositions will form the header or 'contents page' of the UGR itself. section elements will be used to emulate the UGR folders. ",
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"copyright": "Copyright © 2026+ NHS England Licensed under the Apache License, Version 2.0 (the \\\\\\\"License\\\\\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\\\\\"AS IS\\\\\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"fhirVersion": "4.0.1",
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"kind": "resource",
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"abstract": false,

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