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KazeemHamzat · KazeemHamzat · commit 1849126538be · 2026-01-19T11:02:57.000Z
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diff --git a/CodeSystem/CodeSystem-Genomics-mds-questiontag.json b/CodeSystem/CodeSystem-Genomics-mds-questiontag.json
@@ -204,7 +204,7 @@
     },
     {
      "code": "P-37",
-     "display": "Patient - Locaal Pedigree / Family identifier",
+     "display": "Patient - Local Pedigree / Family identifier",
      "definition": "Patient's pedigree or family identifying id."
     },
     {
diff --git a/Observation/Observation-Cellularity-Example.json b/Observation/Observation-Cellularity-Example.json
@@ -12,7 +12,13 @@
  },
  "status": "final",
  "code": {
-  "text": "Cellularity"
+  "coding": [
+   {
+    "system": "http://snomed.info/sct",
+    "code": "1022461000000100",
+    "display": "Nucleated red blood cell count"
+   }
+  ]
  },
  "subject": {
   "reference": "Patient/Patient-ZelmaHadjkiss-Example",
diff --git a/Observation/Observation-CellularityKayBurbridge-Example.json b/Observation/Observation-CellularityKayBurbridge-Example.json
@@ -12,7 +12,13 @@
  },
  "status": "final",
  "code": {
-  "text": "Cellularity"
+  "coding": [
+   {
+    "system": "http://snomed.info/sct",
+    "code": "1022461000000100",
+    "display": "Nucleated red blood cell count"
+   }
+  ]
  },
  "subject": {
   "reference": "Patient/Patient-KayBurbridge-Example",
diff --git a/Observation/Observation-CellularityPatrickSammy-Example.json b/Observation/Observation-CellularityPatrickSammy-Example.json
@@ -12,7 +12,13 @@
  },
  "status": "final",
  "code": {
-  "text": "Cellularity"
+  "coding": [
+   {
+    "system": "http://snomed.info/sct",
+    "code": "1022461000000100",
+    "display": "Nucleated red blood cell count"
+   }
+  ]
  },
  "subject": {
   "reference": "Patient/Patient-PatrickSammy-Example",
diff --git a/Observation/Observation-DelayedSpeechLanguageDevt-Example.json b/Observation/Observation-DelayedSpeechLanguageDevt-Example.json
@@ -5,8 +5,8 @@
 		"tag": [
 			{
 				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-				"code": "PCI-31",
-				"display": "Patient clinical information - Suspected inborn error type(s)"
+				"code": "PCI-6",
+				"display": "Patient clinical information - Phenotypic details"
 			}
 		]
 	},
diff --git a/Observation/Observation-DiseasePenetrance-Example.json b/Observation/Observation-DiseasePenetrance-Example.json
@@ -5,8 +5,8 @@
 		"tag": [
 			{
 				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-				"code": "PCI-2",
-				"display": "Patient clinical information - Disease status"
+				"code": "PCI-15",
+				"display": "Patient clinical information - Pedigree details / Relevant family history"
 			}
 		]
 	},
diff --git a/Observation/Observation-DiseasePenetrancePheobeSmitham-Example.json b/Observation/Observation-DiseasePenetrancePheobeSmitham-Example.json
@@ -5,8 +5,8 @@
 		"tag": [
 			{
 				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-				"code": "PCI-2",
-				"display": "Patient clinical information - Disease status"
+				"code": "PCI-15",
+				"display": "Patient clinical information - Pedigree details / Relevant family history"
 			}
 		]
 	},
diff --git a/Observation/Observation-DutchLipidScore-Example.json b/Observation/Observation-DutchLipidScore-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PCI-2",
-    "display": "Patient clinical information - Disease status"
+    "code": "MIS-1",
+    "display": "Further supporting information"
    }
   ]
  },
diff --git a/Observation/Observation-GenomicTherapeuticImplication-Example.json b/Observation/Observation-GenomicTherapeuticImplication-Example.json
@@ -5,13 +5,6 @@
   "profile": [
    "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication",
    "http://hl7.eu/fhir/laboratory/StructureDefinition/Observation-resultslab-eu-lab"
-  ],
-  "tag": [
-   {
-    "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "TR-39",
-    "display": "Test request - Linked test request reference"
-   }
   ]
  },
  "status": "final",
diff --git a/Observation/Observation-GenomicsVariantSLC52A2-Example.json b/Observation/Observation-GenomicsVariantSLC52A2-Example.json
@@ -5,13 +5,6 @@
   "profile": [
    "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant",
    "http://hl7.eu/fhir/laboratory/StructureDefinition/Observation-resultslab-eu-lab"
-  ],
-  "tag": [
-   {
-    "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "TR-28",
-    "display": "Test Request - Target type"
-   }
   ]
  },
  "status": "final",
diff --git a/Observation/Observation-Haemoglobin-Example.json b/Observation/Observation-Haemoglobin-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PCI-22",
-    "display": "Patient clinical information - Fetal haemoglobinopathy paternal screening genotype"
+    "code": "MIS-1",
+    "display": "Further supporting information"
    }
   ]
  },
diff --git a/Observation/Observation-HistoryOfFetalLoss-Example.json b/Observation/Observation-HistoryOfFetalLoss-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PCI-39",
-    "display": "Patient clinical information - Fetal gestation"
+    "code": "PCI-36",
+    "display": "Patient clinical information - Pregnancy status"
    }
   ]
  },
diff --git a/Observation/Observation-NeoplasticCell-Example.json b/Observation/Observation-NeoplasticCell-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PS-26",
-    "display": "Primary Sample - Tumour nuclear content in marked area"
+    "code": "PCI-15",
+    "display": "Patient clinical information - Pedigree details / Relevant family history"
    }
   ]
  },
diff --git a/Observation/Observation-NeoplasticCellKayBurbridge-Example.json b/Observation/Observation-NeoplasticCellKayBurbridge-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PS-26",
-    "display": "Primary Sample - Tumour nuclear content in marked area"
+    "code": "PCI-15",
+    "display": "Patient clinical information - Pedigree details / Relevant family history"
    }
   ]
  },
diff --git a/Observation/Observation-NoFirstTrimesterFetalAnomalies-Example.json b/Observation/Observation-NoFirstTrimesterFetalAnomalies-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PCI-39",
-    "display": "Patient clinical information - Fetal gestation"
+    "code": "PCI-36",
+    "display": "Patient clinical information - Pregnancy status"
    }
   ]
  },
diff --git a/Observation/Observation-NoSecondTrimesterFetalAnomalies-Example.json b/Observation/Observation-NoSecondTrimesterFetalAnomalies-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PCI-39",
-    "display": "Patient clinical information - Fetal gestation"
+    "code": "PCI-7",
+    "display": "Patient clinical information - Symptoms"
    }
   ]
  },
diff --git a/Observation/Observation-Platelets-Example.json b/Observation/Observation-Platelets-Example.json
@@ -1,15 +1,6 @@
 {
  "resourceType": "Observation",
  "id": "Observation-Platelets-Example",
- "meta": {
-  "tag": [
-   {
-    "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PS-14",
-    "display": "Primary Sample - Nucleated cell count"
-   }
-  ]
- },
  "status": "final",
  "code": {
   "coding": [
diff --git a/Observation/Observation-PregnancyConfirmation-Example.json b/Observation/Observation-PregnancyConfirmation-Example.json
@@ -7,6 +7,26 @@
 				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
 				"code": "PCI-36",
 				"display": "Patient clinical information - Pregnancy status"
+			},
+			{
+				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
+				"code": "PCI-37",
+				"display": "Patient clinical information - Pregnancy type"
+			},
+			{
+				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
+				"code": "PCI-38",
+				"display": "Patient clinical information - Pregnancy gestation period"
+			},
+			{
+				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
+				"code": "PCI-39",
+				"display": "Patient clinical information - Fetal gestation"
+			},
+			{
+				"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
+				"code": "PCI-40",
+				"display": "Patient clinical information - Estimated delivery date (EDD)"
 			}
 		]
 	},
diff --git a/Observation/Observation-QueryXanthoma-Example.json b/Observation/Observation-QueryXanthoma-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PCI-2",
-    "display": "Patient clinical information - Disease status"
+    "code": "PCI-7",
+    "display": "Patient clinical information - Symptoms"
    }
   ]
  },
diff --git a/Observation/Observation-TumourTypeDemeizaSeo-Example.json b/Observation/Observation-TumourTypeDemeizaSeo-Example.json
@@ -5,8 +5,8 @@
   "tag": [
    {
     "system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
-    "code": "PS-26",
-    "display": "Primary Sample - Tumour nuclear content in marked area"
+    "code": "PS-35",
+    "display": "Primary Sample - Solid tumour type"
    }
   ]
  },

Original file line number	Diff line number	Diff line change
`@@ -204,7 +204,7 @@`
`204`	`204`	`},`
`205`	`205`	`{`
`206`	`206`	`"code": "P-37",`
`207`		`- "display": "Patient - Locaal Pedigree / Family identifier",`
	`207`	`+ "display": "Patient - Local Pedigree / Family identifier",`
`208`	`208`	`"definition": "Patient's pedigree or family identifying id."`
`209`	`209`	`},`
`210`	`210`	`{`
Original file line number	Diff line number	Diff line change
`@@ -5,8 +5,8 @@`
`5`	`5`	`"tag": [`
`6`	`6`	`{`
`7`	`7`	`"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",`
`8`		`- "code": "PCI-31",`
`9`		`- "display": "Patient clinical information - Suspected inborn error type(s)"`
	`8`	`+ "code": "PCI-6",`
	`9`	`+ "display": "Patient clinical information - Phenotypic details"`
`10`	`10`	`}`
`11`	`11`	`]`
`12`	`12`	`},`