Draft Status
Ready - team will start page creating immediately
Category
Quantification and Computation
Key Investigators
- Arthur Chakwizira (Brigham and Women's Hospital, Harvard Medical School, USA)
Project Description
Time-dependent diffusion MRI offers sensitivity to brain tissue microstructure, but has limited specificity. Multiple features of the tissue microstructure tend to map onto the same signal contrast. Multi-dimensional experiment designs using freely modulated gradient waveforms have been proposed as a remedy, with previous work demonstrating the ability to disentangle features such as cell size, cell shape and membrane permeability. However, the waveforms used in previous studies were stochastically generated and a rigorous optimiser remains an unmet need.
Objective
Develop a gradient waveform optimiser that allows targeting specific tissue characteristics (such as cell size) while respecting hardware constraints and maximising diffusion encoding efficiency
Approach and Plan
- Parameterise gradient waveforms using a set of control points in the Cartesian plane, together with cubic spline interpolation
- Define a cost function predicting sensitivity to various microstructural properties, using the gradient waveform and analytical microstructure models
- Set up constraints to account for hardware and time limitations. Enforce a minimum b-value.
- Choose an appropriate solver
Progress and Next Steps
- Parameterised waveforms using control points and cubic spline interpolation
- Defined a cost function evaluating sensitivity using the gradient waveform and microstructure models
- Imposed constraints to account for hardware (slew rate, gradient amplitude) and echo time. Enforced a minimum b-value of 4000 s/mm2.
- Chose the patternsearch solver with randomised initial conditions
Illustrations
Stochastically generated waveforms from previous work, designed for the MAGNUS MRI scanner.
Example waveforms from the new optimiser, illustrating both the gradient in time and the encoding power spectrum. These waveforms are optimised for specificity to restricted diffusion (cell size).
Background and References
GitHub repository
Previous work presenting the idea of time-dependent diffusion MRI with non-standard waveforms:
-
Chakwizira, A., Zhu, A., Foo, T., Westin, C.-F., Szczepankiewicz, F. & Nilsson, M. 2023. Diffusion MRI with free gradient waveforms on a high-performance gradient system: Probing restriction and exchange in the human brain. NeuroImage. 283: 120409
-
Chakwizira, A., Westin, C.-F., Brabec, J., Lasič, S., Knutsson, L., Szczepankiewicz, F. & Nilsson, M. 2022. Diffusion MRI with pulsed and free gradient waveforms: Effects of restricted diffusion and exchange. NMR in Biomedicine. n/a(n/a): e4827.
Draft Status
Ready - team will start page creating immediately
Category
Quantification and Computation
Key Investigators
Project Description
Time-dependent diffusion MRI offers sensitivity to brain tissue microstructure, but has limited specificity. Multiple features of the tissue microstructure tend to map onto the same signal contrast. Multi-dimensional experiment designs using freely modulated gradient waveforms have been proposed as a remedy, with previous work demonstrating the ability to disentangle features such as cell size, cell shape and membrane permeability. However, the waveforms used in previous studies were stochastically generated and a rigorous optimiser remains an unmet need.
Objective
Develop a gradient waveform optimiser that allows targeting specific tissue characteristics (such as cell size) while respecting hardware constraints and maximising diffusion encoding efficiency
Approach and Plan
Progress and Next Steps
Illustrations
Stochastically generated waveforms from previous work, designed for the MAGNUS MRI scanner.
Example waveforms from the new optimiser, illustrating both the gradient in time and the encoding power spectrum. These waveforms are optimised for specificity to restricted diffusion (cell size).
Background and References
GitHub repository
Previous work presenting the idea of time-dependent diffusion MRI with non-standard waveforms:
Chakwizira, A., Zhu, A., Foo, T., Westin, C.-F., Szczepankiewicz, F. & Nilsson, M. 2023. Diffusion MRI with free gradient waveforms on a high-performance gradient system: Probing restriction and exchange in the human brain. NeuroImage. 283: 120409
Chakwizira, A., Westin, C.-F., Brabec, J., Lasič, S., Knutsson, L., Szczepankiewicz, F. & Nilsson, M. 2022. Diffusion MRI with pulsed and free gradient waveforms: Effects of restricted diffusion and exchange. NMR in Biomedicine. n/a(n/a): e4827.