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from webweb import Web
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from wordcloud import STOPWORDS , WordCloud
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- from . import utils
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+ from . import dendrogram , utils , wgcna
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from .linkers import get_clustergrammer_link
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from .translate import hex2rgb , mpl_to_html_image
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@@ -2554,7 +2554,7 @@ def get_WGCNAPlots(data, identifier):
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METDiss , METDiss .index , distfun = None , linkagefun = "ward" , div_clusters = False
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)
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if dendro_tree is not None :
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- dendrogram = dendrogram .plot_dendrogram (
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+ dendrogram_ = dendrogram .plot_dendrogram (
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dendro_tree , hang = 0.9 , cutoff_line = False
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)
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@@ -2566,8 +2566,8 @@ def get_WGCNAPlots(data, identifier):
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xaxis = dict (
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domain = [0 , 1 ],
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range = [
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- np .min (dendrogram ["layout" ]["xaxis" ]["tickvals" ]) - 6 ,
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- np .max (dendrogram ["layout" ]["xaxis" ]["tickvals" ]) + 4 ,
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+ np .min (dendrogram_ ["layout" ]["xaxis" ]["tickvals" ]) - 6 ,
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+ np .max (dendrogram_ ["layout" ]["xaxis" ]["tickvals" ]) + 4 ,
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],
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showgrid = False ,
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zeroline = True ,
@@ -2631,7 +2631,7 @@ def get_WGCNAPlots(data, identifier):
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figure = tools .make_subplots (rows = 2 , cols = 1 , print_grid = False )
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- for i in list (dendrogram ["data" ]):
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+ for i in list (dendrogram_ ["data" ]):
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figure .append_trace (i , 1 , 1 )
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for j in list (heatmap ["data" ]):
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figure .append_trace (j , 2 , 1 )
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