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Intensity Per Nucleus Tool

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Volker edited this page Nov 8, 2019 · 7 revisions

The tool segments the nuclei in the dapi or hoechst channel of the image and measures the mean intensity per nuclei in the other channels of the image. The macro can be applied recursively to all images in a folder and its subfolders.

the control image of the mri intensity per nucleus tool the measurements of the mri intensity per nucleus tool

Getting started

To install the tool save the file intensity_per_nucleus_tool.ijm into the folder macros/toolsets of your FIJI installation.

Select the "intensity_per_nucleus_tool" toolset from the >> button of the ImageJ launcher.

toolset.png

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