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.github/workflows/check-bioc.yml

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.github/workflows/rworkflows.yml

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name: rworkflows
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'on':
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push:
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branches:
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- master
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- main
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- devel
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- RELEASE_**
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pull_request:
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branches:
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- master
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- main
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- devel
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- RELEASE_**
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jobs:
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rworkflows:
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permissions: write-all
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }})
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container: ${{ matrix.config.cont }}
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strategy:
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fail-fast: ${{ false }}
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matrix:
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config:
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- os: ubuntu-latest
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bioc: devel
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r: auto
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cont: ghcr.io/bioconductor/bioconductor_docker:devel
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rspm: ~
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- os: macOS-latest
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bioc: release
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r: auto
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cont: ~
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rspm: ~
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- os: windows-latest
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bioc: release
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r: auto
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cont: ~
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rspm: ~
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steps:
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- uses: neurogenomics/rworkflows@master
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with:
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run_bioccheck: ${{ false }}
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run_rcmdcheck: ${{ true }}
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as_cran: ${{ true }}
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run_vignettes: ${{ true }}
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has_testthat: ${{ true }}
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run_covr: ${{ true }}
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run_pkgdown: ${{ true }}
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has_runit: ${{ false }}
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has_latex: ${{ false }}
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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run_docker: ${{ false }}
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DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
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runner_os: ${{ runner.os }}
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cache_version: cache-v1
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docker_registry: ghcr.io

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