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RPKM, FPKM, and TPM-like normalization #8

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d-laub opened this issue Jul 27, 2023 · 2 comments
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RPKM, FPKM, and TPM-like normalization #8

d-laub opened this issue Jul 27, 2023 · 2 comments
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enhancement New feature or request wontfix This will not be worked on

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d-laub commented Jul 27, 2023

Add a function for RPKM, FPKM, and TPKM-like normalization, given total counts. For example, to normalize read counts/depth from chromatin accessibility assays.
@d-laub d-laub added the enhancement New feature or request label Jul 27, 2023
@d-laub d-laub mentioned this issue Jul 27, 2023
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d-laub commented Jul 27, 2023

See normalization options offered by deepTools' bamCoverage.

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d-laub commented Mar 13, 2025 •
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Likely won't add this thanks to the existence of https://github.com/genialis/RNAnorm 🎉

@d-laub d-laub closed this as completed Mar 13, 2025
@d-laub d-laub added the wontfix This will not be worked on label Mar 13, 2025
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