DESCRIPTION

Package: spatialLIBD
Title: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved
    transcriptomics data
Version: 1.21.5
Date: 2025-05-09
Authors@R:
    c(
    person("Leonardo", "Collado-Torres", role = c("aut", "cre"), 
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person(c("Kristen", "R."), "Maynard",
    role = "ctb", email = "Kristen.Maynard@libd.org",
    comment = c(ORCID = "0000-0003-0031-8468")),
    person(c("Andrew", "E."), "Jaffe",
    role = "ctb", email = "andrew.jaffe@libd.org",
    comment = c(ORCID = "0000-0001-6886-1454")),
    person("Brenda", "Pardo",
    role = "ctb", email = "bpardo@lcgej.unam.mx",
    comment = c(ORCID = "0000-0001-8103-7136")),
    person("Abby", "Spangler",
    role = "ctb", email = "aspangle@gmail.com",
    comment = c(ORCID = "0000-0002-0028-9348")),
    person("Jesús", "Vélez Santiago",
    role = "ctb", email = "jvelezmagic@gmail.com",
    comment = c(ORCID = "0000-0001-5128-3838")),
    person("Lukas M.", "Weber",
    role = "ctb", email = "lukas.weber.edu@gmail.com", 
    comment = c(ORCID = "0000-0002-3282-1730")),
    person("Louise", "Huuki-Myers", role = "ctb", email = "lahuuki@gmail.com",
    comment = c(ORCID = "0000-0001-5148-3602")),
    person("Nicholas", "Eagles", role = "ctb", email = "nickeagles77@gmail.com",
    comment = c(ORCID = "0000-0002-9808-5254"))
    )
Description: Inspect interactively the spatially-resolved transcriptomics data
    from the 10x Genomics Visium platform as well as data from the 
    Maynard, Collado-Torres et al, Nature Neuroscience, 2021 project analyzed by
    Lieber Institute for Brain Development (LIBD) researchers and collaborators.
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Imports: 
    shiny,
    golem,
    ggplot2,
    cowplot,
    plotly,
    viridisLite,
    shinyWidgets,
    sessioninfo,
    grid,
    grDevices,
    methods,
    AnnotationHub,
    utils,
    png,
    scater,
    DT,
    ExperimentHub,
    SummarizedExperiment,
    stats,
    graphics,
    S4Vectors,
    IRanges,
    benchmarkme,
    SingleCellExperiment,
    BiocFileCache,
    jsonlite,
    tibble,
    rtracklayer,
    Matrix,
    BiocGenerics,
    GenomicRanges,
    magick,
    paletteer,
    scuttle,
    edgeR,
    limma,
    statmod,
    MatrixGenerics,
    rlang,
    dplyr,
    ComplexHeatmap,
    circlize
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
URL: https://github.com/LieberInstitute/spatialLIBD
BugReports: https://support.bioconductor.org/tag/spatialLIBD
Suggests: 
    knitr,
    RefManageR,
    rmarkdown,
    BiocStyle,
    testthat (>= 2.1.0),
    covr,
    here,
    BiocManager,
    lobstr,
    DropletUtils,
    RColorBrewer
VignetteBuilder: knitr
biocViews: Homo_sapiens_Data, ExperimentHub, SequencingData, SingleCellData,
    ExpressionData, Tissue, PackageTypeData, SpatialData
Depends:
    SpatialExperiment (>= 1.3.3),
    R (>= 4.1)