Copier update (misc version bumps) (#52)

Pull in upstream template changes

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->

## Summary by CodeRabbit

* **Chores**
* Updated versions for several dependencies and tools, including UV,
PNPM, Copier, pytest, and related extensions.
* Corrected package and module names for Copier template extensions
across configuration and setup files.
* Improved logic for dependency setup scripts to better handle
conflicting flags.
  * Added new version keys for additional tools in configuration.
* Updated setup instructions in documentation for generating lock files.
  * Adjusted linting configuration to ignore a specific rule.
  * Refined formatting in workflow and configuration files.
* Updated dependabot configuration to reduce noise from patch update
notifications.

<!-- end of auto-generated comment: release notes by coderabbit.ai -->

Author: ejfine

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier
-_commit: v0.0.57
+_commit: v0.0.60
 _src_path: gh:LabAutomationAndScreening/copier-base-template.git
 description: Copier template for creating Python libraries and executables
 python_ci_versions:

.devcontainer/devcontainer.json

@@ -61,5 +61,5 @@
   "initializeCommand": "sh .devcontainer/initialize-command.sh",
   "onCreateCommand": "sh .devcontainer/on-create-command.sh",
   "postStartCommand": "sh .devcontainer/post-start-command.sh"
-  // Devcontainer context hash (do not manually edit this, it's managed by a pre-commit hook): 01ec0f62 # spellchecker:disable-line
+  // Devcontainer context hash (do not manually edit this, it's managed by a pre-commit hook): 2b781a57 # spellchecker:disable-line
 }

.devcontainer/install-ci-tooling.py

@@ -7,10 +7,10 @@
 import tempfile
 from pathlib import Path
 
-UV_VERSION = "0.7.12"
-PNPM_VERSION = "10.13.1"
-COPIER_VERSION = "9.7.1"
-COPIER_TEMPLATES_EXTENSION_VERSION = "0.3.1"
+UV_VERSION = "0.8.3"
+PNPM_VERSION = "10.14.0"
+COPIER_VERSION = "9.8.0"
+COPIER_TEMPLATE_EXTENSIONS_VERSION = "0.3.2"
 PRE_COMMIT_VERSION = "4.2.0"
 GITHUB_WINDOWS_RUNNER_BIN_PATH = r"C:\Users\runneradmin\.local\bin"
 INSTALL_SSM_PLUGIN_BY_DEFAULT = False
@@ -78,7 +78,7 @@ def main():
                 "install",
                 f"copier=={COPIER_VERSION}",
                 "--with",
-                f"copier-templates-extensions=={COPIER_TEMPLATES_EXTENSION_VERSION}",
+                f"copier-template-extensions=={COPIER_TEMPLATE_EXTENSIONS_VERSION}",
             ],
             check=True,
             env=uv_env,

.devcontainer/manual-setup-deps.py

@@ -58,8 +58,8 @@ def main():
     is_windows = platform.system() == "Windows"
     uv_env = dict(os.environ)
     uv_env.update({"UV_PYTHON_PREFERENCE": "only-system", "UV_PYTHON": args.python_version})
-    skip_check_lock = args.skip_check_lock
-    if skip_check_lock and args.optionally_check_lock:
+    skip_check_lock = args.skip_check_lock or args.optionally_check_lock
+    if args.skip_check_lock and args.optionally_check_lock:
         print("Cannot skip and optionally check the lock file at the same time.")
         sys.exit(1)
 

.github/workflows/pre-commit.yaml

@@ -39,7 +39,7 @@ jobs:
         if: ${{ github.event_name != 'push' }}
         uses: actions/checkout@v4.2.2
 
-      - name: Install latest versions of  packages
+      - name: Install latest versions of packages
         uses: ./.github/actions/install_deps
         with:
           python-version: ${{ inputs.python-version }}

README.md

@@ -10,7 +10,8 @@ To create a new repository using this template:
 1. Inside that devcontainer, run `python .devcontainer/install-ci-tooling.py` to install necessary tooling to instantiate the template (you can copy/paste the script from this
 1. Delete all files currently in the repository. Optional...but makes it easiest to avoid git conflicts.
 1. Run copier to instantiate the template: `copier copy --trust gh:LabAutomationAndScreening/copier-python-package-template.git .`
-1. Run `uv lock` to generate the lock file
+1. Run `python .devcontainer/manual-setup-deps.py --optionally-check-lock` to generate the lock file(s)
+1. Stage all files to prepare for commit (`git add .`)
 1. Run `python3 .github/workflows/hash_git_files.py . --for-devcontainer-config-update` to update the hash for your devcontainer file
 1. Commit the changes (optional)
 1. Rebuild your new devcontainer

copier.yml

@@ -124,7 +124,7 @@ _templates_suffix: .jinja
 _exclude:
     - "copier.yml"
 
-# adapted from https://github.com/copier-org/copier-templates-extensions#context-hook-extension
+# adapted from https://github.com/copier-org/copier-template-extensions#context-hook-extension
 _jinja_extensions:
-- copier_templates_extensions.TemplateExtensionLoader
+- copier_template_extensions.TemplateExtensionLoader
 - extensions/context.py:ContextUpdater

extensions/context.py

@@ -1,32 +1,32 @@
-# adapted from https://github.com/copier-org/copier-templates-extensions#context-hook-extension
+# adapted from https://github.com/copier-org/copier-template-extensions#context-hook-extension
 from typing import Any
 from typing import override
 
-from copier_templates_extensions import ContextHook
+from copier_template_extensions import ContextHook
 
 
 class ContextUpdater(ContextHook):
     update = False
 
     @override
     def hook(self, context: dict[Any, Any]) -> dict[Any, Any]:
-        context["uv_version"] = "0.7.12"
-        context["pnpm_version"] = "10.13.1"
+        context["uv_version"] = "0.8.3"
+        context["pnpm_version"] = "10.14.0"
         context["pre_commit_version"] = "4.2.0"
         context["pyright_version"] = "1.1.403"
-        context["pytest_version"] = "8.4.0"
+        context["pytest_version"] = "8.4.1"
         context["pytest_randomly_version"] = "3.16.0"
         context["pytest_cov_version"] = "6.2.1"
-        context["copier_version"] = "9.7.1"
-        context["copier_templates_extension_version"] = "0.3.1"
+        context["copier_version"] = "9.8.0"
+        context["copier_template_extensions_version"] = "0.3.2"
         context["sphinx_version"] = "8.1.3"
-        context["pulumi_version"] = "3.181.0"
-        context["pulumi_aws_version"] = "6.83.0"
-        context["pulumi_aws_native_version"] = "1.30.0"
+        context["pulumi_version"] = "3.186.0"
+        context["pulumi_aws_version"] = "7.1.0"
+        context["pulumi_aws_native_version"] = "1.31.0"
         context["pulumi_command_version"] = "1.1.0"
-        context["pulumi_github_version"] = "6.7.2"
+        context["pulumi_github_version"] = "6.7.3"
         context["pulumi_okta_version"] = "4.20.0"
-        context["boto3_version"] = "1.38.38"
+        context["boto3_version"] = "1.39.14"
         context["ephemeral_pulumi_deploy_version"] = "0.0.4"
         context["pydantic_version"] = "2.11.7"
         context["pyinstaller_version"] = "6.13.0"
@@ -36,12 +36,14 @@ def hook(self, context: dict[Any, Any]) -> dict[Any, Any]:
         context["uvicorn_version"] = "0.35.0"
         context["lab_auto_pulumi_version"] = "0.1.15"
 
-        context["nuxt_ui_version"] = "^3.1.2"
-        context["nuxt_version"] = "^3.17.3"
+        context["nuxt_ui_version"] = "^3.3.0"
+        context["nuxt_version"] = "^3.18.0"
         context["typescript_version"] = "^5.8.2"
-        context["vue_version"] = "^3.5.13"
-        context["vue_router_version"] = "^4.5.0"
-        context["faker_version"] = "^9.8.0"
+        context["dot_env_cli_version"] = "^9.0.0"
+        context["playwright_version"] = "^1.52.0"
+        context["vue_version"] = "^3.5.18"
+        context["vue_router_version"] = "^4.5.1"
+        context["faker_version"] = "^9.9.0"
         context["graphql_codegen_cli_version"] = "^5.0.5"
         context["graphql_codegen_typescript_version"] = "^4.1.6"
 

pyproject.toml

@@ -6,12 +6,12 @@ readme = "README.md"
 requires-python = ">=3.12.7"
 dependencies = [
     # Managed by upstream template
-    "pytest>=8.4.0",
+    "pytest>=8.4.1",
     "pytest-cov>=6.2.1",
     "pytest-randomly>=3.16.0",
     "pyright[nodejs]>=1.1.403",
-    "copier>=9.7.1",
-    "copier-templates-extensions>=0.3.1"
+    "copier>=9.8.0",
+    "copier-template-extensions>=0.3.2"
 
     # Specific to this template
 

ruff.toml

@@ -62,6 +62,7 @@ ignore = [
     "TD003", # Up to the author's judgement whether a TODO requires a link to an issue or not
     "TID252", # Sometimes it makes sense to use relative imports, that's a judgement call for us, not ruff
     "TC006", # Adding quotes around classes unnecessarily confuses the IDE for automatic refactoring
+    "SIM114", # Using `or` statements to simplify this would confuse the coverage checker
 ]
 
 # Allow fix for all enabled rules (when `--fix`) is provided.