@@ -6,6 +6,7 @@ __Please note:__ CLIJ is deprecated. [Make the transition to CLIJ2](https://clij
6
6
<img src =" images/mini_clij1_logo.png " width =" 18 " height =" 18 " /> Method is available in CLIJ (deprecated release)
7
7
<img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /> Method is available in CLIJ2 (stable release)
8
8
<img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /> Method is available in CLIJx (experimental release)
9
+ <img src =" images/mini_cle_logo.png " width =" 18 " height =" 18 " /> Method is available in clEsperanto (experimental)
9
10
10
11
11
12
@@ -16,54 +17,54 @@ __Categories:__ [Binary](https://clij.github.io/clij2-docs/reference__binary), [
16
17
<a name =" B " ></a >
17
18
18
19
## B
19
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_binaryEdgeDetection " >binaryEdgeDetection</a >
20
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_cle_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_binaryEdgeDetection " >binaryEdgeDetection</a >
20
21
Determines pixels/voxels which are on the surface of binary objects and sets only them to 1 in the destination image. All other pixels are set to 0.
21
22
22
23
<a name =" D " ></a >
23
24
24
25
## D
25
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectAndLabelMaxima " >detectAndLabelMaxima (Experimental)</a >
26
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectAndLabelMaxima " >detectAndLabelMaxima (Experimental)</a >
26
27
Determines maximum regions in a Gaussian blurred version of the original image.
27
28
28
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectLabelEdges " >detectLabelEdges</a >
29
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectLabelEdges " >detectLabelEdges</a >
29
30
Takes a labelmap and returns an image where all pixels on label edges are set to 1 and all other pixels to 0.
30
31
31
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectMaxima2DBox " >detectMaxima2DBox</a >
32
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_cle_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectMaxima2DBox " >detectMaxima2DBox</a >
32
33
Detects local maxima in a given square/cubic neighborhood.
33
34
34
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectMaxima3DBox " >detectMaxima3DBox</a >
35
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_cle_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectMaxima3DBox " >detectMaxima3DBox</a >
35
36
Detects local maxima in a given square/cubic neighborhood.
36
37
37
- ### <img src =" images/mini_clij1_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectMaximaSliceBySliceBox " >detectMaximaSliceBySliceBox</a >
38
+ ### <img src =" images/mini_clij1_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectMaximaSliceBySliceBox " >detectMaximaSliceBySliceBox</a >
38
39
Detects local maxima in a given square neighborhood of an input image stack.
39
40
40
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectMinima2DBox " >detectMinima2DBox</a >
41
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectMinima2DBox " >detectMinima2DBox</a >
41
42
Detects local minima in a given square/cubic neighborhood.
42
43
43
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectMinima3DBox " >detectMinima3DBox</a >
44
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectMinima3DBox " >detectMinima3DBox</a >
44
45
Detects local minima in a given square/cubic neighborhood.
45
46
46
- ### <img src =" images/mini_clij1_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_detectMinimaSliceBySliceBox " >detectMinimaSliceBySliceBox</a >
47
+ ### <img src =" images/mini_clij1_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_detectMinimaSliceBySliceBox " >detectMinimaSliceBySliceBox</a >
47
48
Detects local minima in a given square neighborhood of an input image stack.
48
49
49
50
<a name =" F " ></a >
50
51
51
52
## F
52
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_findAndLabelMaxima " >findAndLabelMaxima (Experimental)</a >
53
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_findAndLabelMaxima " >findAndLabelMaxima (Experimental)</a >
53
54
Determine maxima with a given tolerance to surrounding maxima and background and label them.
54
55
55
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_findMaxima " >findMaxima (Experimental)</a >
56
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_findMaxima " >findMaxima (Experimental)</a >
56
57
Finds and labels local maxima with neighboring maxima and background above a given tolerance threshold.
57
58
58
59
<a name =" L " ></a >
59
60
60
61
## L
61
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_labelSpots " >labelSpots</a >
62
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_labelSpots " >labelSpots</a >
62
63
Transforms a binary image with single pixles set to 1 to a labelled spots image.
63
64
64
65
<a name =" S " ></a >
65
66
66
67
## S
67
- ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><a href =" https://clij.github.io/clij2-docs/reference_spotsToPointList " >spotsToPointList</a >
68
+ ### <img src =" images/mini_empty_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clij2_logo.png " width =" 18 " height =" 18 " /><img src =" images/mini_clijx_logo.png " width =" 18 " height =" 18 " /><img src = " images/mini_empty_logo.png " width = " 18 " height = " 18 " />< a href =" https://clij.github.io/clij2-docs/reference_spotsToPointList " >spotsToPointList</a >
68
69
Transforms a spots image as resulting from maximum/minimum detection in an image where every column contains d pixels (with d = dimensionality of the original image) with the coordinates of the maxima/minima.
69
70
0 commit comments