This reference contains all methods currently available in CLIJ, CLIJ2 and CLIJx for segmenting images.. Read more about CLIJs release cycle
Please note: CLIJ is deprecated. Make the transition to CLIJ2.
Method is available in CLIJ (deprecated release)
Method is available in CLIJ2 (stable release)
Method is available in CLIJx (experimental release)
Method is available in clEsperanto (experimental)
Categories: Binary, Filter, Graphs, Labels, Math, Matrices, Measurements, Projections, Transformations, Detection
[A],[B], C, D, E, F,[G], H, I, J, K, L, M, N, O, P, Q, R, S,[T], U, V,[W], X, Y, Z
Applies a Weka model using functionality of Fijis Trainable Weka Segmentation plugin.
Applies a Weka model using functionality of Fijis Trainable Weka Segmentation plugin.
The automatic thresholder utilizes the threshold methods from ImageJ on a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
Applies a pre-trained CLIJx-Weka model to a 2D image.
Generates a feature stack for Trainable Weka Segmentation.
Generates a feature image for Trainable Weka Segmentation.
Computes a binary image with pixel values 0 and 1.
The automatic thresholder utilizes the Default threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
Applies a Difference-of-Gaussian filter to an image and thresholds it with given sigma and threshold values.
The automatic thresholder utilizes the Huang threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the IJ_IsoData threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Intermodes threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the IsoData threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Li threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the MaxEntropy threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Mean threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the MinError threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Minimum threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Moments threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Otsu threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Percentile threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the RenyiEntropy threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Shanbhag threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Triangle threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
The automatic thresholder utilizes the Yen threshold method implemented in ImageJ using a histogram determined on the GPU to create binary images as similar as possible to ImageJ 'Apply Threshold' method.
Trains a Weka model using functionality of Fijis Trainable Weka Segmentation plugin.
Trains a Weka model using functionality of Fijis Trainable Weka Segmentation plugin.
Trains a Weka model using functionality of Fijis Trainable Weka Segmentation plugin.
Applies a pre-trained CLIJx-Weka model to an image and a corresponding label map.
29 methods listed.