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reference_minimumOctagon.md

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minimumOctagon

Applies a minimum filter with kernel size 3x3 n times to an image iteratively.

Odd iterations are done with box neighborhood, even iterations with a diamond. Thus, with n > 2, the filter shape is an octagon. The given number of iterations makes the filter result very similar to minimum sphere. Approximately:radius = iterations - 2

Category: Filter

Usage in ImageJ macro

Ext.CLIJ2_minimumOctagon(Image input, Image destination, Number iterations);

Usage in object oriented programming languages

Java
// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters ClearCLBuffer input = clij2.push(inputImagePlus); destination = clij2.create(input); int iterations = 10;

// Execute operation on GPU
clij2.minimumOctagon(input, destination, iterations);
// show result
destinationImagePlus = clij2.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clij2.release(input);
clij2.release(destination);
Matlab
% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters input = clij2.pushMat(input_matrix); destination = clij2.create(input); iterations = 10;

% Execute operation on GPU
clij2.minimumOctagon(input, destination, iterations);
% show result
destination = clij2.pullMat(destination)

% cleanup memory on GPU
clij2.release(input);
clij2.release(destination);
Icy JavaScript
// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters input_sequence = getSequence(); input = clij2.pushSequence(input_sequence); destination = clij2.create(input); iterations = 10;

// Execute operation on GPU
clij2.minimumOctagon(input, destination, iterations);
// show result
destination_sequence = clij2.pullSequence(destination)
Icy.addSequence(destination_sequence);
// cleanup memory on GPU
clij2.release(input);
clij2.release(destination);

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