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reference_generateLabelFeatureImage.md

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generateLabelFeatureImage

Generates a feature image for Trainable Weka Segmentation.

Use this terminology to specify which features should be generated:

  • BOUNDING_BOX_DEPTH
  • BOUNDING_BOX_WIDTH
  • BOUNDING_BOX_HEIGHT
  • CENTROID_X
  • CENTROID_Y
  • CENTROID_Z
  • MASS_CENTER_X
  • MASS_CENTER_Y
  • MASS_CENTER_Z
  • MAX_DISTANCE_TO_CENTROID
  • MAX_DISTANCE_TO_MASS_CENTER
  • MEAN_DISTANCE_TO_CENTROID
  • MEAN_DISTANCE_TO_MASS_CENTER
  • MAX_MEAN_DISTANCE_TO_CENTROID_RATIO
  • MAX_MEAN_DISTANCE_TO_MASS_CENTER_RATIO
  • MAXIMUM_INTENSITY
  • MEAN_INTENSITY
  • MINIMUM_INTENSITY
  • SUM_INTENSITY
  • STANDARD_DEVIATION_INTENSITY
  • PIXEL_COUNT
  • local_mean_average_distance_of_touching_neighbors
  • local_maximum_average_distance_of_touching_neighbors
  • count_touching_neighbors
  • local_minimum_average_distance_of_touching_neighbors
  • average_touch_pixel_count
  • local_minimum_count_touching_neighbors
  • average_distance_n_closest_neighbors
  • average_distance_of_touching_neighbors
  • local_mean_count_touching_neighbors
  • local_mean_average_distance_n_closest_neighbors
  • local_maximum_average_distance_n_closest_neighbors
  • local_standard_deviation_average_distance_of_touching_neighbors
  • local_maximum_count_touching_neighbors
  • local_standard_deviation_count_touching_neighbors
  • local_standard_deviation_average_distance_n_closest_neighbors
  • local_minimum_average_distance_n_closest_neighbors

Example: "MEAN_INTENSITY count_touching_neighbors"

Usage in ImageJ macro

Ext.CLIJx_generateLabelFeatureImage(Image input, Image label_map, Image label_feature_image_destination, String feature_definitions);

Back to CLIJ2 reference Back to CLIJ2 documentation

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