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command_output.txt
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Process started
#######################################################################
Please cite the following paper when using nnU-Net:
Isensee, F., Jaeger, P. F., Kohl, S. A., Petersen, J., & Maier-Hein, K. H. (2021). nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods, 18(2), 203-211.
#######################################################################
There are 6 cases in the source folder
I am process 0 out of 1 (max process ID is 0, we start counting with 0!)
There are 6 cases that I would like to predict
using pin_memory on device 0
Predicting hippocampus_001:
perform_everything_on_gpu: True
Prediction done, transferring to CPU if needed
sending off prediction to background worker for resampling and export
done with hippocampus_001
Predicting hippocampus_003:
perform_everything_on_gpu: True
Prediction done, transferring to CPU if needed
sending off prediction to background worker for resampling and export
done with hippocampus_003
Predicting hippocampus_004:
perform_everything_on_gpu: True
Prediction done, transferring to CPU if needed
sending off prediction to background worker for resampling and export
done with hippocampus_004
Predicting hippocampus_006:
perform_everything_on_gpu: True
Prediction done, transferring to CPU if needed
sending off prediction to background worker for resampling and export
done with hippocampus_006
Predicting hippocampus_007:
perform_everything_on_gpu: True
Prediction done, transferring to CPU if needed
output is either too large for python process-process communication or all export workers are busy. Saving temporarily to file...
sending off prediction to background worker for resampling and export
done with hippocampus_007
Predicting hippocampus_008:
perform_everything_on_gpu: True
Prediction done, transferring to CPU if needed
output is either too large for python process-process communication or all export workers are busy. Saving temporarily to file...
sending off prediction to background worker for resampling and export
done with hippocampus_008
result_csv_path: E:\nnUNet_GUI\nnUNet_results\nnunet3d\Dataset005_task043D\nnUNetTrainer__nnUNetPlans__3d_fullres\fold_1\test_result\test_result.csv
DICE: 0.9455479397408529 ± 0.020023439189939107
ASD: 0.28434677729664176 ± 0.06106130726426404