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DESCRIPTION
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Package: MSPrep
Title:
Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics
Data
Version: 1.5.1
Authors@R:
c(person("Max", "McGrath",
email = "[email protected]",
role = c("aut", "cre")),
person("Matt", "Mulvahill",
email = "[email protected]",
role = c("aut")),
person("Grant", "Hughes",
email = "",
role = c("aut")),
person("Sean", "Jacobson",
email = "[email protected]",
role = c("aut")),
person("Harrison", "Pielke-lombardo",
email = "[email protected]",
role = c("aut")),
person("Katerina", "Kechris",
email = "[email protected]",
role = c("aut", "cph", "ths")))
Description:
Package performs summarization of replicates, filtering by frequency, several
different options for imputing missing data, and a variety of options for
transforming, batch correcting, and normalizing data.
URL: https://github.com/KechrisLab/MSPrep
BugReports: https://github.com/KechrisLab/MSPrep/issues
Depends:
R (>= 4.1.0)
Imports:
SummarizedExperiment,
S4Vectors,
pcaMethods (>= 1.24.0),
crmn,
preprocessCore,
dplyr (>= 0.7),
tidyr,
tibble (>= 1.2),
magrittr,
rlang,
stats,
stringr,
methods,
missForest,
sva,
VIM,
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat (>= 1.0.2)
VignetteBuilder: knitr
LazyData: false
NeedsCompilation: no
License: GPL-3
biocViews: Metabolomics,
MassSpectrometry,
Preprocessing
Encoding: UTF-8
RoxygenNote: 7.1.2