From c688b2a300bfc51e9d44a0cefd426dbe401b64c3 Mon Sep 17 00:00:00 2001 From: MicroPhen <73820680+MicroPhen@users.noreply.github.com> Date: Mon, 23 May 2022 12:17:09 +0200 Subject: [PATCH] Create README.md --- Modeling/README.md | 9 +++++++++ 1 file changed, 9 insertions(+) create mode 100644 Modeling/README.md diff --git a/Modeling/README.md b/Modeling/README.md new file mode 100644 index 0000000..260beb8 --- /dev/null +++ b/Modeling/README.md @@ -0,0 +1,9 @@ +# Process modeling + +With the Juypter notebooks and related data files in this repository the results of Table 2 can be reproduced. + +The notebooks contain detailed descriptions of all modeling steps and fitting results for the two monocultures with engineered strains $\Delta\textsf{ARG}$ $\textsf{LEU}^{++}$ and $\Delta\textsf{LEU}$ $\textsf{ARG}^{+}$ as well as the final co-culture with $\Delta\textsf{ARG}$ $\textsf{LEU}^{++}$ $\leftrightarrow$ $\Delta\textsf{LEU}$ $\textsf{ARG}^{++}$. + +## Requirements + +The ODE-based formulation, validation and analyses of presented models is based on the pyFOOMB package. Please follow the installation instructions given under https://github.com/MicroPhen/pyFOOMB.