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PR for fixes build error (#15)
* fixes build error for fix_toml * Rename BootstrapReport.py to report.py * fixes for `fix-toml` * fixes test * changes version * Rename report.py to main.py * changes name to main * changes * updates readme for #15 * Update src/BootstrapReport/__init__.py --------- Co-authored-by: jmshapir <[email protected]>
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examples/_generate_example_data.py

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import numpy as np
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def main():
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outdir = 'source/lib/BootstrapTV/examples'
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outdir = 'examples'
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gamma_rep, gamma_est = generate_example_dataset('gamma')
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df_gamma_rep, df_gamma_est = pd.DataFrame(columns = ['replicate_value']), pd.DataFrame(columns = ['estimate', 'std_err'])
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df_gamma_rep['replicate_value'], df_gamma_est['estimate'] = gamma_rep, [gamma_est]
@@ -22,6 +22,14 @@ def main():
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df_normal_rep.to_csv(f'{outdir}/normal_replicates.csv', index_label = 'replicate_number')
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df_normal_est.to_csv(f'{outdir}/normal_estimate.csv', index = False)
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ratio_rep, ratio_est = generate_example_dataset('ratio')
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df_ratio_rep, df_ratio_est = pd.DataFrame(columns = ['replicate_value']), pd.DataFrame(columns = ['estimate', 'std_err'])
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df_ratio_rep['replicate_value'], df_ratio_est['estimate'] = ratio_rep, [ratio_est]
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df_ratio_est['std_err'] = [np.std(ratio_rep, ddof = 1)]
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df_ratio_rep.index += 1
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df_ratio_rep.to_csv(f'{outdir}/ratio_replicates.csv', index_label = 'replicate_number')
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df_ratio_est.to_csv(f'{outdir}/ratio_estimate.csv', index = False)
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def generate_example_dataset(name):
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""" Generates example data used in BootstrapTV library

examples/examples.py

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import sys, os, re
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sys.path.append('/'.join(re.split('/|\\\\', os.path.dirname( __file__ ))[0:-1]) + '/src/BootstrapReport')
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import timeit
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from BootstrapReport import ObjectOfInterest
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from main import ObjectOfInterest
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import pandas as pd
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def gamma_example():

examples/ratio_estimate.csv

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estimate,std_err
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-0.7509871848905179,2.666604638638273

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