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Update rRNA-depletionAnalysis.nf
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rRNA-depletionAnalysis.nf

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@@ -6,7 +6,7 @@ def helpMessage() {
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==------------------------------------==
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Usage:
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The typical command for running the pipeline is as follows:
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nextflow run main.nf --bams "*.bam" --gff <.gff.gz> -rRNAgenes A,B,C -profile conda
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nextflow run rRNA-depletionAnalysis.nf --bams "*.bam" --gff <.gff.gz> -rRNAgenes A,B,C -profile conda
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Mandatory arguments:
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--bams .bam input files containg the reads

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