-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathApp.tsx
567 lines (531 loc) · 17.3 KB
/
App.tsx
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
import React from 'react'
import {
BrowserRouter,
Navigate,
Route,
Routes,
useParams
} from 'react-router-dom'
import { Layout, message } from 'antd'
import { FaSpinner } from 'react-icons/fa'
import * as dwc from 'dicomweb-client'
import AppConfig, { ServerSettings, ErrorMessageSettings } from './AppConfig'
import CaseViewer from './components/CaseViewer'
import Header from './components/Header'
import InfoPage from './components/InfoPage'
import Worklist from './components/Worklist'
import { User, AuthManager } from './auth'
import OidcManager from './auth/OidcManager'
import { StorageClasses } from './data/uids'
import DicomWebManager from './DicomWebManager'
import { joinUrl } from './utils/url'
import { CustomError, errorTypes } from './utils/CustomError'
import NotificationMiddleware, {
NotificationMiddlewareContext
} from './services/NotificationMiddleware'
function ParametrizedCaseViewer ({ clients, user, app, config }: {
clients: { [key: string]: DicomWebManager }
user?: User
app: {
name: string
version: string
uid: string
organization?: string
}
config: AppConfig
}): JSX.Element {
const { studyInstanceUID } = useParams()
const enableAnnotationTools = !(config.disableAnnotationTools ?? false)
const preload = config.preload ?? false
return (
<CaseViewer
clients={clients}
user={user}
annotations={config.annotations}
preload={preload}
app={app}
enableAnnotationTools={enableAnnotationTools}
studyInstanceUID={studyInstanceUID}
/>
)
}
function _createClientMapping ({ baseUri, gcpBaseUrl, settings, onError }: {
baseUri: string
gcpBaseUrl: string
settings: ServerSettings[]
onError: (
error: dwc.api.DICOMwebClientError,
serverSettings: ServerSettings
) => void
}): { [sopClassUID: string]: DicomWebManager } {
const storageClassMapping: { [key: string]: number } = { default: 0 }
const clientMapping: { [sopClassUID: string]: DicomWebManager } = {}
settings.forEach(serverSettings => {
if (serverSettings.storageClasses != null) {
serverSettings.storageClasses.forEach(sopClassUID => {
if (Object.values<string>(StorageClasses).includes(sopClassUID)) {
if (sopClassUID in storageClassMapping) {
storageClassMapping[sopClassUID] += 1
} else {
storageClassMapping[sopClassUID] = 1
}
} else {
console.warn(
`unknown storage class "${sopClassUID}" specified ` +
`for configured server "${serverSettings.id}"`
)
}
})
} else {
if (window.location.pathname.includes('/projects/')) {
const pathname = window.location.pathname.split('/study/')[0]
const pathUrl = `${gcpBaseUrl}${pathname}/dicomWeb`
serverSettings.url = pathUrl
}
storageClassMapping.default += 1
clientMapping.default = new DicomWebManager({
baseUri,
settings: [serverSettings],
onError
})
}
})
if (storageClassMapping.default > 1) {
NotificationMiddleware.onError(
NotificationMiddlewareContext.SLIM,
new CustomError(
errorTypes.COMMUNICATION,
'Only one default server can be configured without specification ' +
'of storage classes.'
)
)
}
for (const key in storageClassMapping) {
if (key === 'default') {
continue
}
if (storageClassMapping[key] > 1) {
NotificationMiddleware.onError(
NotificationMiddlewareContext.SLIM,
new CustomError(
errorTypes.COMMUNICATION,
'Only one configured server can specify a given storage class. ' +
`Storage class "${key}" is specified by more than one ` +
'of the configured servers.'
)
)
}
}
if (Object.keys(storageClassMapping).length > 1) {
settings.forEach(server => {
const client = new DicomWebManager({
baseUri,
settings: [server],
onError
})
if (server.storageClasses != null) {
server.storageClasses.forEach(sopClassUID => {
clientMapping[sopClassUID] = client
})
}
})
}
Object.values(StorageClasses).forEach(sopClassUID => {
if (!(sopClassUID in clientMapping)) {
clientMapping[sopClassUID] = clientMapping.default
}
})
return clientMapping
}
interface AppProps {
name: string
homepage: string
version: string
config: AppConfig
}
interface AppState {
clients: { [sopClassUID: string]: DicomWebManager }
user?: User
isLoading: boolean
redirectTo?: string
wasAuthSuccessful: boolean
error?: ErrorMessageSettings
}
class App extends React.Component<AppProps, AppState> {
private readonly auth?: AuthManager
private readonly handleDICOMwebError = (
error: dwc.api.DICOMwebClientError,
serverSettings: ServerSettings
): void => {
if (error.status === 401) {
this.signIn()
} else if (error.status === 403) {
// eslint-disable-next-line @typescript-eslint/no-floating-promises
NotificationMiddleware.onError(
NotificationMiddlewareContext.DICOMWEB,
new CustomError(
errorTypes.COMMUNICATION,
'User is not authorized to access DICOMweb resources.')
)
}
const logServerError = (): void => {
// eslint-disable-next-line @typescript-eslint/no-floating-promises
NotificationMiddleware.onError(
NotificationMiddlewareContext.DICOMWEB,
new CustomError(
errorTypes.COMMUNICATION,
'An unexpected server error occured.'
)
)
}
if (serverSettings.errorMessages !== undefined) {
serverSettings.errorMessages.forEach((setting: ErrorMessageSettings) => {
if (error.status === setting.status) {
this.setState({
error: {
status: error.status,
message: setting.message
}
})
} else if (error.status === 500) {
logServerError()
}
})
} else if (error.status === 500) {
logServerError()
}
}
constructor (props: AppProps) {
super(props)
console.info('instatiate app')
console.info(`app is located at "${props.config.path}"`)
const { protocol, host } = window.location
const baseUri = `${protocol}//${host}`
const appUri = joinUrl(props.config.path, baseUri)
const oidcSettings = props.config.oidc
if (oidcSettings !== undefined) {
console.info(
'app uses the following OIDC configuration: ',
props.config.oidc
)
this.auth = new OidcManager(appUri, oidcSettings)
}
if (props.config.servers.length === 0) {
NotificationMiddleware.onError(
NotificationMiddlewareContext.SLIM,
new CustomError(
errorTypes.COMMUNICATION,
'One server needs to be configured.')
)
}
console.info(
'app uses the following DICOMweb server configuration: ',
props.config.servers
)
this.handleServerSelection = this.handleServerSelection.bind(this)
message.config({ duration: 5 })
this.addGcpSecondaryAnnotationServer(props.config)
this.state = {
clients: _createClientMapping({
baseUri,
gcpBaseUrl: props.config.gcpBaseUrl ?? 'https://healthcare.googleapis.com/v1',
settings: props.config.servers,
onError: this.handleDICOMwebError
}),
isLoading: true,
wasAuthSuccessful: false
}
}
addGcpSecondaryAnnotationServer (config: AppProps['config']): void {
const serverId = 'gcp_secondary_annotation_server'
const urlParams = new URLSearchParams(window.location.search)
const url = urlParams.get('gcp')
const gcpSecondaryAnnotationServer = config.servers.find(
(server) => server.id === serverId
)
if (gcpSecondaryAnnotationServer === undefined && typeof url === 'string') {
config.servers.push({
id: serverId,
write: true,
url,
storageClasses: [
StorageClasses.COMPREHENSIVE_SR,
StorageClasses.COMPREHENSIVE_3D_SR,
StorageClasses.SEGMENTATION,
StorageClasses.MICROSCOPY_BULK_SIMPLE_ANNOTATION,
StorageClasses.PARAMETRIC_MAP,
StorageClasses.ADVANCED_BLENDING_PRESENTATION_STATE,
StorageClasses.COLOR_SOFTCOPY_PRESENTATION_STATE,
StorageClasses.GRAYSCALE_SOFTCOPY_PRESENTATION_STATE,
StorageClasses.PSEUDOCOLOR_SOFTCOPY_PRESENTATION_STATE
]
})
}
}
handleServerSelection ({ url }: { url: string }): void {
console.info('select DICOMweb server: ', url)
const tmpClient = new DicomWebManager({
baseUri: '',
settings: [{
id: 'tmp',
url,
read: true,
write: false
}],
onError: this.handleDICOMwebError
})
tmpClient.updateHeaders(this.state.clients.default.headers)
/**
* Use the newly created client for all storage classes. We may want to
* make this more sophisticated in the future to allow users to override
* the entire server configuration.
*/
this.setState(state => {
const clients: { [key: string]: DicomWebManager } = {}
for (const key in state.clients) {
clients[key] = tmpClient
}
return { clients }
})
}
/**
* Handle successful authentication event.
*
* Authorizes the DICOMweb client to access the DICOMweb server and directs
* the user back to the App.
*
* @param user - Information about the user
* @param authorization - Value of the "Authorization" HTTP header field
*/
handleSignIn = ({ user, authorization }: {
user: User
authorization: string
}): void => {
for (const key in this.state.clients) {
const client = this.state.clients[key]
client.updateHeaders({ Authorization: authorization })
}
const storedPath = window.localStorage.getItem('slim_path')
const storedSearch = window.localStorage.getItem('slim_search')
if (storedPath != null) {
const currentPath = window.location.pathname
if (storedPath !== currentPath) {
let path = storedPath
if (storedSearch != null) {
path += storedSearch
}
window.location.href = path
}
}
window.localStorage.removeItem('slim_path')
window.localStorage.removeItem('slim_search')
this.setState({ user: user })
}
signIn (): void {
if (this.auth !== undefined) {
console.info('try to sign in user')
this.auth.signIn({ onSignIn: this.handleSignIn }).then(() => {
console.info('sign-in was successful')
this.setState({
isLoading: false,
wasAuthSuccessful: true
})
}).catch((error) => {
console.error(error)
// eslint-disable-next-line @typescript-eslint/no-floating-promises
NotificationMiddleware.onError(
NotificationMiddlewareContext.AUTH,
new CustomError(
errorTypes.AUTHENTICATION,
'Could not sign-in user.')
)
this.setState({
isLoading: false,
redirectTo: undefined,
wasAuthSuccessful: false
})
})
} else {
this.setState({
isLoading: false,
redirectTo: undefined,
wasAuthSuccessful: true
})
}
}
componentDidMount (): void {
const path = window.localStorage.getItem('slim_path')
if (path == null) {
window.localStorage.setItem('slim_path', window.location.pathname)
window.localStorage.setItem('slim_search', window.location.search)
}
this.signIn()
}
render (): React.ReactNode {
const appInfo = {
name: this.props.name,
version: this.props.version,
homepage: this.props.homepage,
uid: '1.2.826.0.1.3680043.9.7433.1.5',
organization: this.props.config.organization
}
const enableWorklist = !(
this.props.config.disableWorklist ?? false
)
const enableServerSelection = (
this.props.config.enableServerSelection ?? false
)
let worklist
if (enableWorklist) {
worklist = <Worklist clients={this.state.clients} />
} else {
worklist = <div>Worklist has been disabled.</div>
}
let isLogoutPossible = false
let onLogout: () => void
if (
// eslint-disable-next-line @typescript-eslint/prefer-optional-chain
this.props.config.oidc != null &&
this.props.config.oidc.endSessionEndpoint != null
) {
onLogout = (): void => {
if (this.auth != null) {
// eslint-disable-next-line @typescript-eslint/no-floating-promises
this.auth.signOut()
}
}
isLogoutPossible = true
} else {
onLogout = () => {}
isLogoutPossible = false
}
const layoutStyle = { height: '100vh' }
const layoutContentStyle = { height: '100%' }
if (this.state.redirectTo !== undefined) {
return (
<BrowserRouter basename={this.props.config.path}>
<Navigate to={this.state.redirectTo} replace />
</BrowserRouter>
)
} else if (this.state.isLoading) {
return (
<BrowserRouter basename={this.props.config.path}>
<Layout style={layoutStyle}>
<Header
app={appInfo}
user={this.state.user}
showWorklistButton={false}
onServerSelection={this.handleServerSelection}
showServerSelectionButton={false}
appConfig={this.props.config}
clients={this.state.clients}
/>
<Layout.Content style={layoutContentStyle}>
<FaSpinner />
</Layout.Content>
</Layout>
</BrowserRouter>
)
} else if (!this.state.wasAuthSuccessful) {
return (
<InfoPage type='error' message='Sign-in failed.' />
)
} else if (this.state.error != null) {
return (
<InfoPage type='error' message={this.state.error.message} />
)
} else {
return (
<BrowserRouter basename={this.props.config.path}>
<Routes>
<Route
path='/'
element={
<Layout style={layoutStyle}>
<Header
app={appInfo}
user={this.state.user}
showWorklistButton={false}
onServerSelection={this.handleServerSelection}
onUserLogout={isLogoutPossible ? onLogout : undefined}
showServerSelectionButton={enableServerSelection}
appConfig={this.props.config}
/>
<Layout.Content style={layoutContentStyle}>
{worklist}
</Layout.Content>
</Layout>
}
/>
<Route
path='/studies/:studyInstanceUID/*'
element={
<Layout style={layoutStyle}>
<Header
app={appInfo}
user={this.state.user}
showWorklistButton={enableWorklist}
onServerSelection={this.handleServerSelection}
onUserLogout={isLogoutPossible ? onLogout : undefined}
showServerSelectionButton={enableServerSelection}
appConfig={this.props.config}
/>
<Layout.Content style={layoutContentStyle}>
<ParametrizedCaseViewer
clients={this.state.clients}
user={this.state.user}
config={this.props.config}
app={appInfo}
/>
</Layout.Content>
</Layout>
}
/>
<Route
path='/projects/:project/locations/:location/datasets/:dataset/dicomStores/:dicomStore/study/:studyInstanceUID/*'
element={
<Layout style={layoutStyle}>
<Header
app={appInfo}
user={this.state.user}
showWorklistButton={enableWorklist}
onServerSelection={this.handleServerSelection}
onUserLogout={isLogoutPossible ? onLogout : undefined}
showServerSelectionButton={enableServerSelection}
appConfig={this.props.config}
/>
<Layout.Content style={layoutContentStyle}>
<ParametrizedCaseViewer
clients={this.state.clients}
user={this.state.user}
config={this.props.config}
app={appInfo}
/>
</Layout.Content>
</Layout>
}
/>
<Route
path='/logout'
element={
<Layout style={layoutStyle}>
<Header
app={appInfo}
user={this.state.user}
showWorklistButton={false}
onServerSelection={this.handleServerSelection}
onUserLogout={isLogoutPossible ? onLogout : undefined}
showServerSelectionButton={enableServerSelection}
appConfig={this.props.config}
/>
Logged out
</Layout>
}
/>
</Routes>
</BrowserRouter>
)
}
}
}
export default App