You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The sequence of PTBP1_HUMAN (P26599) has changed in UniProt. It has 4 RRM domains, 2 each from RRM_1 (PF00076) and RRM_5 (PF13893).
RRM_5:
(38, 152),
(309, 433) --> This Structural InstancStI is causing the error
RRM_1:
(186, 252),
(456, 521)
The above sequence numbering matches with UniProt sequence versions=238, but the sequence changed in versions=239.
With the change in UniProt version, the corresponding SIFTS file has also changed accordingly, but not Pfam (v35.0).
This sequence change is causing workflow errors during the residue-mapping step of P26599_A (309, 433), recognizing only the domain end residue.
According to the new sequence, the RRM domain starts at 335, and the corresponding PDB (2EVZ) starts from the 350th amino acid residue of the UniProt sequence.
The issue can be replicated with the current version of the workflow (v1.0.0) by using the CWL tool Tools/resmapping_pfam_instances_subwf.cwl (sub-workflow for residue-mapping of Pfam StIs).
Query this tool for RRM_5 (PF13893) Pfam family.
The text was updated successfully, but these errors were encountered:
The sequence of PTBP1_HUMAN (P26599) has changed in UniProt. It has 4 RRM domains, 2 each from
RRM_1 (PF00076)
andRRM_5 (PF13893)
.The above sequence numbering matches with UniProt sequence
versions=238
, but the sequence changed inversions=239
.With the change in UniProt version, the corresponding SIFTS file has also changed accordingly, but not Pfam (
v35.0
).This sequence change is causing workflow errors during the
residue-mapping
step ofP26599_A (309, 433)
, recognizing only the domain end residue.According to the new sequence, the RRM domain starts at 335, and the corresponding PDB (
2EVZ
) starts from the 350th amino acid residue of the UniProt sequence.The issue can be replicated with the current version of the workflow (v1.0.0) by using the CWL tool
Tools/resmapping_pfam_instances_subwf.cwl
(sub-workflow for residue-mapping of Pfam StIs).Query this tool for RRM_5 (PF13893) Pfam family.
The text was updated successfully, but these errors were encountered: