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Copy pathmodules.json
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182 lines (182 loc) · 8.31 KB
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{
"name": "sanger-tol/ascc",
"homePage": "https://github.com/sanger-tol/ascc",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"blast/blastn": {
"branch": "master",
"git_sha": "454504547c9d928cd374248a02ea8e137326da2c",
"installed_by": ["modules"],
"patch": "modules/nf-core/blast/blastn/blast-blastn.diff"
},
"blast/makeblastdb": {
"branch": "master",
"git_sha": "c7a7f06819adcf6f922e11b47f308b7c74484d67",
"installed_by": ["modules"]
},
"coverm/contig": {
"branch": "master",
"git_sha": "27e31681fdbf1e511257355a236037a8cd9c2b2e",
"installed_by": ["modules"]
},
"diamond/blastx": {
"branch": "master",
"git_sha": "c44e4bb090eb4c9136f6d3f786285e4a9000f38f",
"installed_by": ["modules"]
},
"fcs/fcsadaptor": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/fcs/fcsadaptor/fcs-fcsadaptor.diff"
},
"fcsgx/rungx": {
"branch": "master",
"git_sha": "3ff31d30117edcbdae4b4a540abc20cbeb6a52d9",
"installed_by": ["modules"],
"patch": "modules/nf-core/fcsgx/rungx/fcsgx-rungx.diff"
},
"gnu/sort": {
"branch": "master",
"git_sha": "7ad318b7b2c0ef6a101c01b6083b8acd6a9a63de",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "96c57dfd98a0641886a67bd449fe33ee2ec0e374",
"installed_by": ["modules"]
},
"kraken2/kraken2": {
"branch": "master",
"git_sha": "71a39f3598935d64ffd65f0960e4d2d4a42ab778",
"installed_by": ["modules"],
"patch": "modules/nf-core/kraken2/kraken2/kraken2-kraken2.diff"
},
"minimap2/align": {
"branch": "master",
"git_sha": "a1589a1910c7b19f9cb9db98b3641d883a45bf4b",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
},
"minimap2/index": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["fastx_map_long_reads", "modules"]
},
"ncbitools/vecscreen": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"samtools/dict": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/dict/samtools-dict.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "9a48bce39a67e2cb34b8f125fc1d50f0ad98b616",
"installed_by": ["bam_samtools_merge_markdup", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["bam_samtools_merge_markdup"]
},
"samtools/markdup": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["bam_samtools_merge_markdup"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "9a48bce39a67e2cb34b8f125fc1d50f0ad98b616",
"installed_by": ["bam_samtools_merge_markdup", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"]
},
"seqkit/sliding": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"sourmash/sketch": {
"branch": "master",
"git_sha": "30c7adaae047db8e06f71386eb6059fdd1ea6b13",
"installed_by": ["modules"]
},
"tiara/tiara": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "65f5e638d901a51534c68fd5c1c19e8112fb4df1",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "fdc08b8b1ae74f56686ce21f7ea11ad11990ce57",
"installed_by": ["subworkflows"]
}
}
}
},
"https://github.com/sanger-tol/nf-core-modules.git": {
"modules": {
"sanger-tol": {
"blobtoolkit/generatecsv": {
"branch": "main",
"git_sha": "23e5b60803e95c1a4db81228142ae2a767b81f50",
"installed_by": ["modules"]
},
"fastxalign/minimap2align": {
"branch": "main",
"git_sha": "81ae063393c8646485529deb8d760eb576a3870f",
"installed_by": ["fastx_map_long_reads"]
},
"fastxalign/pyfastxindex": {
"branch": "main",
"git_sha": "f919028603ca42cb01a59e45475c19106840372d",
"installed_by": ["fastx_map_long_reads"]
},
"samtools/mergedup": {
"branch": "main",
"git_sha": "fe57b32a304a149835e0fa829d4ca454b3b252e6",
"installed_by": ["bam_samtools_merge_markdup", "modules"]
}
}
},
"subworkflows": {
"sanger-tol": {
"bam_samtools_merge_markdup": {
"branch": "main",
"git_sha": "3d708ba5f6d959da2fb814e51832c57664b57941",
"installed_by": ["fastx_map_long_reads"]
},
"fastx_map_long_reads": {
"branch": "main",
"git_sha": "3d708ba5f6d959da2fb814e51832c57664b57941",
"installed_by": ["subworkflows"]
}
}
}
}
}
}