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tutorials.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="">
<meta name="author" content="">
<link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
<title>ImmuneRegulation</title>
<!-- Bootstrap CSS - NOT REQUIRED FOR IGV -->
<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
<!-- jQuery UI CSS -->
<link rel="stylesheet" type="text/css" href="//ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/themes/smoothness/jquery-ui.css"/>
<!-- Font Awesome CSS -->
<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
<link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
<!-- IGV CSS -->
<link rel="stylesheet" type="text/css" href="https://igv.org/web/beta/igv.css">
<!-- DataTables CSS -->
<link rel="stylesheet" type="text/css" href="//cdn.datatables.net/1.10.13/css/jquery.dataTables.css">
<!--link rel="stylesheet" type="text/css" src="./css/jquery.dataTables.min.css"-->
<!-- jQuery JS -->
<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script>
<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/jquery-ui.min.js"></script>
<!-- Bootstrap JS - NOT REQUIRED FOR IGV -->
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
<!-- IGV JS - Deneme DEV -->
<script src="./js/igv-immuneregulation.js"></script>
<!-- D3 JS -->
<script src='http://d3js.org/d3.v3.min.js'></script>
<!-- Bootstrap Multi-Select -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-multiselect/0.9.13/js/bootstrap-multiselect.min.js" integrity="sha256-1fK87Pt9T7XXn/Vj3CWSfJlZkL5f73092A8YL7p7avc=" crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-multiselect/0.9.13/css/bootstrap-multiselect.css" integrity="sha256-O1jJhOIWWDc3wq75g7aXDl7aEQT2XPkieX/Mz/u4hQ0=" crossorigin="anonymous"/>
<!-- DataTables JS -->
<script type="text/javascript" charset="utf8" src="//cdn.datatables.net/1.10.13/js/jquery.dataTables.js"></script>
<!--script type="text/javascript" charset="utf8" src="./js/jquery.dataTables.min.js"></script-->
<style type="text/css">
#custom-search-input {
margin:0;
margin-top: 10px;
padding: 0;
}
#custom-search-input .search-query {
padding-right: 3px;
padding-right: 4px \9;
padding-left: 3px;
padding-left: 4px \9;
/* IE7-8 doesn't have border-radius, so don't indent the padding */
margin-bottom: 0;
-webkit-border-radius: 3px;
-moz-border-radius: 3px;
border-radius: 3px;
}
#custom-search-input button {
border: 0;
background: none;
/** belows styles are working good */
padding: 2px 5px;
margin-top: 2px;
position: relative;
left: -28px;
/* IE7-8 doesn't have border-radius, so don't indent the padding */
margin-bottom: 0;
-webkit-border-radius: 3px;
-moz-border-radius: 3px;
border-radius: 3px;
color:#D9230F;
}
.search-query:focus + button {
z-index: 3;
}
.graph-svg-component {
background-color: AliceBlue;
}
.filter {
display: inline-block;
}
#geneSearch {
background: #1974B8;
}
#geneSearch:hover {
background: #035b9c;
}
#geneSearch:active {
background: #1974B8;
}
.btn, .btn-primary {
background: white;
padding: 14px 24px;
font-weight: 400;
letter-spacing: 1px;
border-radius: 0;
border: 1 solid;
border-color: #bbb;
}
.btn-group, .btn-group-vertical {
margin-left: 10px;
}
.btn:focus, .btn:active:focus, .btn.active:focus {
outline: 0 none;
border: 2 solid;
border-color: #bbb;
}
.btn-primary.active, .btn-primary:focus, .btn-primary:active, .open > .dropdown-toggle.btn-primary {
background: lightgray;
color: #000;
box-shadow: none;
border: 1 solid;
border-color: #bbb;
}
.btn-primary:hover {
background: #bbb;
border: 1 solid;
border-color: #bbb;
}
.btn-primary:active, .btn-primary.raised.active {
background: lightgray;
box-shadow: none;
margin-bottom: -3px;
margin-top: 3px;
border: 1 solid;
border-color: #bbb;
}
.btn-primary.disabled, .btn-primary.disabled:focus, .btn-primary.disabled:active {
background: lightgray;
color: white;
opacity: .7;
border: 1 solid;
border-color: #bbb;
}
circle {
fill-opacity: .7;
fill: rgb(30,144,255);
stroke: #aaa;
}
circle:hover {
fill: red;
stroke: #ccc;
}
caption {
font-size:medium;
text-align: center;
color: blue;
}
table {
font-size: medium;
}
path.line {
fill: none;
stroke: #666;
stroke-width: 1.5px;
}
path.area {
fill: #e7e7e7;
}
.axis {
shape-rendering: crispEdges;
}
.x.axis line {
stroke: #fff;
}
.x.axis .minor {
stroke-opacity: .5;
}
.x.axis path {
display: none;
}
.y.axis line,
.y.axis path {
fill: none;
stroke: #000;
}
.axis--y text {
font: oblique 10px Georgia, serif;
}
div.tooltip {
position: absolute;
text-align: left;
width: 160px;
height: auto;
padding: 10px;
font: 12px sans-serif;
background: lightsteelblue;
border: 0px;
border-radius: 8px;
box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
pointer-events: none;
}
.navbar-nav:hover {
background: #77b7ec;
}
.navbar-nav>.open {
background: #1974B8;
}
.navbar-nav > li > a:active {
font-size: larger;
}
.navbar-nav > li > a:focus {
font-size: larger;
}
.navbar-inverse .navbar-nav>.open>a, .navbar-inverse .navbar-nav>.open>a:focus, .navbar-inverse .navbar-nav>.open>a:hover {
background: #77b7ec;
}
</style>
<script type="text/javascript">
$(document).ready(function() {
$('#example').DataTable( {
"paging": false,
"ordering": false,
"info": false,
"filter": false
} );
} );
</script>
</head>
<body role="document" style="background: #eee;">
<nav class="navbar navbar-inverse navbar-fixed-top" style= "margin-botom:0px;">
<div class="container-fluid" style = "background: #1974B8;">
<div id="navbar">
<ul class="nav navbar-nav" style="margin-left:100px;">
<li>
<a href="index.html" style="padding:0px;"> <img src="images/Logo.png" alt="ImmuneRegulation" height="40" style="margin-right: 10px; margin-top:5px;"> </a>
</li>
<li>
<a href="index.html" class="navbar-brand" style="color: white;" role="button" aria-expanded="false">ImmuneRegulation </a>
</li>
</ul>
<ul class="nav navbar-nav">
<li class="dropdown">
<a href="#" class="dropdown-toggle navbar-brand" style="color: white; margin-left: 10px; opacity:0.5;" data-toggle="dropdown" role="button" aria-expanded="false">Example Queries   
</a>
</li>
</ul>
<!--ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="metadata-all.html">Query Meta-data</a>
</a>
</li>
</ul-->
<ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="tutorials.html">Tutorials</a>
</a>
</li>
</ul>
<ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="feedback.html">Contact Us</a>
</a>
</li>
</ul>
<ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="faq.html">FAQ</a>
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a href="http://www.mssm.edu" target="_blank" style = "padding-top: 0px; padding-bottom: 0px; margin-left: 10px;">
<img src="images/logo.gif" alt="Mount Sinai" height="40" style = "margin-left: 10px; margin-right: 100px; margin-top:5px; margin-bottom:5px;">
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a class="navbar-brand" target="_blank" style="color: white; margin-left: 10px; margin-right: 30px;" href="https://www.immunespace.org/">ImmuneSpace </a>
</li>
</ul>
</div>
<!--/.nav-collapse -->
</div>
</nav>
<div class="container" id = "mainContainer" style="background: white; padding-bottom: 50px; margin-top: 70px; margin-bottom:70px;"> <!-- container start -->
<div class="row" style="background: white; padding-bottom: 50px; margin-top: 30px; font-family:serif;">
<div class="col-md-11" style="margin-left:30px;" >
<h2 style="text-align:left; color: #1974B8;"> <strong> Tutorial #1: Query Browser Overview </strong> </h2>
<iframe src="https://docs.google.com/presentation/d/e/2PACX-1vQy07VHaxRlbbjhrGIzDutSqb6ia8t6UC9xx4TYF540F2e34kpN6guq_ggb8G3cGzKm-M9EAAMPhr6N/embed?start=false&loop=false&delayms=10000" frameborder="0" width="1067" height="830" allowfullscreen="true" mozallowfullscreen="true" webkitallowfullscreen="true"></iframe>
<hr style="height:1px; margin-top:40px; margin-bottom:40px; border:none;color:grey;background-color:grey;">
<h2 style="text-align:left; color: #1974B8;"> <strong> Tutorial #2: Querying cis-eQTL Data </strong> </h2>
<iframe src="https://docs.google.com/presentation/d/e/2PACX-1vTlkt3z6vSQp5B48QScd-8fUFXDg3gnsTy4TltL-4sfeGntrN7K1-xBvBZn3OgXOqRSZqwSB6_CNqpG/embed?start=false&loop=false&delayms=10000" frameborder="0" width="1067" height="830" allowfullscreen="true" mozallowfullscreen="true" webkitallowfullscreen="true"></iframe>
<hr style="height:1px; margin-top:40px; margin-bottom:40px; border:none;color:grey;background-color:grey;">
<h2 style="text-align:left; color: #1974B8;"> <strong> Tutorial #3: Querying trans-eQTL Data </strong> </h2>
<iframe src="https://docs.google.com/presentation/d/e/2PACX-1vQO9P_F13ocA4x-hubVUqXgL0p1U8vEC33rZ7Gd4VzeMdbp7vVedpqCCBTwV0tOPPd_Zf9putNO4por/embed?start=false&loop=false&delayms=10000" frameborder="0" width="1067" height="830" allowfullscreen="true" mozallowfullscreen="true" webkitallowfullscreen="true"></iframe>
<hr style="height:1px; margin-top:40px; margin-bottom:40px; border:none;color:grey;background-color:grey;">
<h2 style="text-align:left; color: #1974B8;"> <strong> Tutorial #4: Querying Transcription-Factor Data </strong> </h2>
<iframe src="https://docs.google.com/presentation/d/e/2PACX-1vTfuzlV86CjBaqh2gKZPmSgwQGGA3KZEyPCx3v9cgqOc3C-lP2cMjrOL7sG7jxiHvEN3XZYqTq0aChR/embed?start=false&loop=false&delayms=10000" frameborder="0" width="1067" height="830" allowfullscreen="true" mozallowfullscreen="true" webkitallowfullscreen="true"></iframe>
<hr style="height:1px; margin-top:40px; margin-bottom:40px; border:none;color:grey;background-color:grey;">
<h2 style="text-align:center; color: #1974B8;"> <strong> Browser Compatibility </strong> </h2>
<table id="example" class="table table-striped table-bordered" style="width:75%; font-size:1.1vw;">
<thead>
<tr>
<th>OS</th>
<th>Version</th>
<th>Chrome</th>
<th>Firefox</th>
<th>Microsoft Edge</th>
<th>Safari</th>
</tr>
</thead>
<tbody>
<tr>
<td>Linux</td>
<td>CentOS 7</td>
<td>71.0</td>
<td>64.0</td>
<td>n/a</td>
<td>n/a</td>
</tr>
<tr>
<td>MacOS</td>
<td>HighSierra</td>
<td>71.0</td>
<td>64.0</td>
<td>n/a</td>
<td>12.0</td>
</tr>
<tr>
<td>Windows</td>
<td>10</td>
<td>71.0</td>
<td>64.0</td>
<td>42.0</td>
<td>n/a</td>
</tr>
</table>
</div>
</div> <!-- container finish-->
<nav class="navbar navbar-inverse navbar-fixed-bottom" style= "margin:5px; border: 1 px solid; border-color: gray; height: 60px;">
<nav class="nav-upper" style = "background: #3f97ca; height: 60px; padding-top:10px;">
<div class="container-fluid" style = "text-align:center; color:white; font-size: normal;">
<ul class="nav navbar-upper">
<li> ImmuneRegulation <span> | </span> Version 1.0.0 </li>
<li> <span><a href = "http://research.mssm.edu/gumuslab/" style = "color:white; text-decoration:underline;"> Gümüş Lab </a></span>
<span> | </span>Icahn School of Medicine at Mount Sinai </li>
</ul>
</div>
</nav>
</nav>
<div class="container-fluid">
<footer>
<p></p>
</footer>
</div>
</body>
</html>