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<!DOCTYPE html>
<html lang="en">
<head>
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-119794696-1"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'UA-119794696-1');
</script>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="">
<meta name="author" content="">
<link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
<title>ImmuneRegulation</title>
<!-- Bootstrap CSS - NOT REQUIRED FOR IGV -->
<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
<!-- jQuery UI CSS -->
<link rel="stylesheet" type="text/css" href="//ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/themes/smoothness/jquery-ui.css"/>
<!-- Font Awesome CSS -->
<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
<link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
<!-- IGV CSS -->
<link rel="stylesheet" type="text/css" href="https://igv.org/web/beta/igv-beta.css">
<!-- DataTables CSS -->
<link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/v/dt/dt-1.10.18/cr-1.5.0/fh-3.1.4/r-2.2.2/sl-1.3.0/datatables.min.css"/>
<!--link rel="stylesheet" type="text/css" src="./css/jquery.dataTables.min.css"-->
<link rel="stylesheet" type="text/css" src="./css/typeahead.css">
<!-- jQuery JS -->
<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script>
<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/jquery-ui.min.js"></script>
<!-- Tooltips -->
<script src="./js/popper.min.js"></script>
<!-- Bootstrap JS - NOT REQUIRED FOR IGV -->
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
<!-- IGV JS -->
<script src="./js/igv-immuneregulation-July2019.js"></script>
<script src="./js/savePng.js"></script>
<script src="./js/jsPDF2.js"></script>
<script src="./js/jsPDF.js"></script>
<script src="./js/svg2pdf.js"></script>
<script src="./js/saveSvgAsPng.js"></script>
<script src="./js/savePdf.js"></script>
<script src="./js/html2canvas.js"></script>
<script src="./js/FileSaver.js"></script>
<!-- D3 JS -->
<script src='https://d3js.org/d3.v3.min.js'></script>
<!-- Bootstrap Multi-Select -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-multiselect/0.9.13/js/bootstrap-multiselect.min.js" integrity="sha256-1fK87Pt9T7XXn/Vj3CWSfJlZkL5f73092A8YL7p7avc=" crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-multiselect/0.9.13/css/bootstrap-multiselect.css" integrity="sha256-O1jJhOIWWDc3wq75g7aXDl7aEQT2XPkieX/Mz/u4hQ0=" crossorigin="anonymous"/>
<link rel="stylesheet" href="//code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css">
<!-- DataTables JS -->
<script type="text/javascript" src="https://cdn.datatables.net/v/dt/dt-1.10.18/cr-1.5.0/fh-3.1.4/r-2.2.2/sl-1.3.0/datatables.min.js"></script>
<script src="https://cdn.rawgit.com/eligrey/canvas-toBlob.js/f1a01896135ab378aa5c0118eadd81da55e698d8/canvas-toBlob.js"></script>
<script src="https://cdn.rawgit.com/eligrey/FileSaver.js/e9d941381475b5df8b7d7691013401e171014e89/FileSaver.min.js"></script>
<script src="./js/type.js"></script>
<script src="./js/genenames.js"></script>
<script src="./js/uploadFile.js"></script>
<script src="./js/uploadFile2.js"></script>
<script src="./js/underscore-min.js"></script>
<script src='https://cdnjs.cloudflare.com/ajax/libs/spin.js/2.0.1/spin.min.js'></script>
<script src="https://code.jquery.com/ui/1.12.1/jquery-ui.min.js"></script>
<script type="text/javascript">
$( function() {
$(document).tooltip({
position: {
my: "center bottom-20",
at: "center top",
using: function( position, feedback ) {
$( this ).css( position );
$( "<div>" )
.addClass( "arrow" )
.addClass( feedback.vertical )
.addClass( feedback.horizontal )
.appendTo( this );
}
}
});
} );
$(document).ready(function() {
$('#datasetT').multiselect({
enableClickableOptGroups: true,
enableCollapsibleOptGroups: true,
buttonWidth: '350px',
nonSelectedText: 'Choose dataset(s)'
});
$('.multiselect-container').find(".caret").click();
$("body").tooltip({ selector: '[data-toggle=tooltip]' });
$("#studyEntryRow").hide();
$("#operationEntryRow").hide();
//User Studies...
$("#userListMain").hide();
$("#userListCis").hide();
$("#userListTrans").hide();
$("#allStudies li:contains(User)").hide();
//Update studyCountText
var allcheckboxes = document.querySelectorAll('input.studyopt');
for(var i = 0; i < allcheckboxes.length; i++) {
allcheckboxes[i].onclick = function() {
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
}
//Emory Checkboxes
var emorycheckboxes = document.querySelectorAll('input.EmoryOption');
var emorycheckall = document.getElementById('EmoryCheckAll');
for(var i = 0; i < emorycheckboxes.length; i++) {
emorycheckboxes[i].onclick = function() {
var emoryCheckCount = document.querySelectorAll('input.EmoryOption:checked').length;
emorycheckall.checked = emoryCheckCount > 0;
emorycheckall.indeterminate = emoryCheckCount > 0 && emoryCheckCount < emorycheckboxes.length;
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
}
emorycheckall.onclick = function() {
for(var i = 0; i < emorycheckboxes.length; i++) {
emorycheckboxes[i].checked = this.checked;
}
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
//Mayo Checkboxes
var mayocheckboxes = document.querySelectorAll('input.MayoOption');
var mayocheckall = document.getElementById('MayoCheckAll');
for(var i = 0; i < mayocheckboxes.length; i++) {
mayocheckboxes[i].onclick = function() {
var mayoCheckCount = document.querySelectorAll('input.MayoOption:checked').length;
mayocheckall.checked = mayoCheckCount > 0;
mayocheckall.indeterminate = mayoCheckCount > 0 && mayoCheckCount < mayocheckboxes.length;
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
}
mayocheckall.onclick = function() {
for(var i = 0; i < mayocheckboxes.length; i++) {
mayocheckboxes[i].checked = this.checked;
}
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
//NIH Checkboxes
var nihcheckboxes = document.querySelectorAll('input.NihOption');
var nihcheckall = document.getElementById('NihCheckAll');
for(var i = 0; i < nihcheckboxes.length; i++) {
nihcheckboxes[i].onclick = function() {
var nihCheckCount = document.querySelectorAll('input.NihOption:checked').length;
nihcheckall.checked = nihCheckCount > 0;
nihcheckall.indeterminate = nihCheckCount > 0 && nihCheckCount < nihcheckboxes.length;
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
}
nihcheckall.onclick = function() {
for(var i = 0; i < nihcheckboxes.length; i++) {
nihcheckboxes[i].checked = this.checked;
}
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
//Yale Checkboxes
var yalecheckboxes = document.querySelectorAll('input.YaleOption');
var yalecheckall = document.getElementById('YaleCheckAll');
for(var i = 0; i < yalecheckboxes.length; i++) {
yalecheckboxes[i].onclick = function() {
var yaleCheckCount = document.querySelectorAll('input.YaleOption:checked').length;
yalecheckall.checked = yaleCheckCount > 0;
yalecheckall.indeterminate = yaleCheckCount > 0 && yaleCheckCount < yalecheckboxes.length;
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
}
yalecheckall.onclick = function() {
for(var i = 0; i < yalecheckboxes.length; i++) {
yalecheckboxes[i].checked = this.checked;
}
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
//CHIKV Checkboxes
var chikvcheckboxes = document.querySelectorAll('input.ChikvOption');
var chikvcheckall = document.getElementById('ChikvCheckAll');
for(var i = 0; i < chikvcheckboxes.length; i++) {
chikvcheckboxes[i].onclick = function() {
var chikvCheckCount = document.querySelectorAll('input.ChikvOption:checked').length;
chikvcheckall.checked = chikvCheckCount > 0;
chikvcheckall.indeterminate = chikvCheckCount > 0 && chikvCheckCount < chikvcheckboxes.length;
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
}
chikvcheckall.onclick = function() {
for(var i = 0; i < chikvcheckboxes.length; i++) {
chikvcheckboxes[i].checked = this.checked;
}
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
//ZIKV Checkboxes
var zikvcheckboxes = document.querySelectorAll('input.ZikvOption');
var zikvcheckall = document.getElementById('ZikvCheckAll');
for(var i = 0; i < zikvcheckboxes.length; i++) {
zikvcheckboxes[i].onclick = function() {
var zikvCheckCount = document.querySelectorAll('input.ZikvOption:checked').length;
zikvcheckall.checked = zikvCheckCount > 0;
zikvcheckall.indeterminate = zikvCheckCount > 0 && zikvCheckCount < zikvcheckboxes.length;
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
}
zikvcheckall.onclick = function() {
for(var i = 0; i < zikvcheckboxes.length; i++) {
zikvcheckboxes[i].checked = this.checked;
}
var allcheckedcount = document.querySelectorAll('input.studyopt:checked').length;
document.getElementById('studyCountText').innerText = allcheckedcount + " studies selected";
if(allcheckedcount > 0)
document.getElementById('deselectDiv').style.visibility = "visible";
else
document.getElementById('deselectDiv').style.visibility = "hidden";
}
});
</script>
<style type="text/css">
.ui-tooltip, .arrow:after {
background: white;
border: 2px solid white;
}
.ui-tooltip {
padding: 10px 20px;
color: black;
border-radius: 10px;
font: bold 14px "Helvetica Neue", Sans-Serif;
box-shadow: 0 0 7px black;
opacity: 0.9;
}
.arrow {
width: 70px;
height: 16px;
overflow: hidden;
position: absolute;
left: 50%;
margin-left: -35px;
bottom: -16px;
}
.arrow.top {
top: -16px;
bottom: auto;
}
.arrow.left {
left: 20%;
}
.arrow:after {
content: "";
position: absolute;
left: 20px;
top: -20px;
width: 25px;
height: 25px;
box-shadow: 6px 5px 9px -9px black;
-webkit-transform: rotate(45deg);
-ms-transform: rotate(45deg);
transform: rotate(45deg);
}
.arrow.top:after {
bottom: -20px;
top: auto;
}
#custom-search-input {
margin:0;
margin-top: 10px;
padding: 0;
}
#custom-search-input .search-query {
padding-right: 3px;
padding-right: 4px \9;
padding-left: 3px;
padding-left: 4px \9;
/* IE7-8 doesn't have border-radius, so don't indent the padding */
margin-bottom: 0;
-webkit-border-radius: 3px;
-moz-border-radius: 3px;
border-radius: 3px;
}
#custom-search-input button {
border: 0;
background: none;
/** belows styles are working good */
padding: 2px 5px;
margin-top: 2px;
position: relative;
left: -28px;
/* IE7-8 doesn't have border-radius, so don't indent the padding */
margin-bottom: 0;
-webkit-border-radius: 3px;
-moz-border-radius: 3px;
border-radius: 3px;
color:#D9230F;
}
.search-query:focus + button {
z-index: 3;
}
.graph-svg-component {
background-color: AliceBlue;
}
.filter {
display: inline-block;
}
#geneSearch, #uploadStudy, #saveModal, #vizListButton, #cisUpload, #cisSampleUpload, #transUpload, #transSampleUpload {
background: #1974B8;
}
#geneSearch:hover, #uploadStudy:hover, #saveModal:hover, #vizListButton:hover, #cisUpload:hover, #cisSampleUpload:hover, #transUpload:hover, #transSampleUpload:hover {
background: #035b9c;
}
#geneSearch:active, #vizListButton:active, #cisUpload:active, #cisSampleUpload:active, #transUpload:active, #transSampleUpload:active {
background: #1974B8;
}
.btn, .btn-primary {
background: white;
padding: 14px 24px;
font-weight: 400;
letter-spacing: 1px;
border-radius: 0;
border: 1 solid;
border-color: #bbb;
}
.btn-group, .btn-group-vertical {
margin-left: 10px;
}
.btn:focus, .btn:active:focus, .btn.active:focus {
outline: 0 none;
border: 2 solid;
border-color: #bbb;
}
.btn-primary.active, .btn-primary:focus, .btn-primary:active, .open > .dropdown-toggle.btn-primary {
background: lightgray;
color: #000;
box-shadow: none;
border: 1 solid;
border-color: #bbb;
}
.btn-primary:hover {
background: #bbb;
border: 1 solid;
border-color: #bbb;
}
.btn-primary:active, .btn-primary.raised.active {
background: lightgray;
box-shadow: none;
margin-bottom: -3px;
margin-top: 3px;
border: 1 solid;
border-color: #bbb;
}
.btn-primary.disabled, .btn-primary.disabled:focus, .btn-primary.disabled:active {
background: lightgray;
color: white;
opacity: .7;
border: 1 solid;
border-color: #bbb;
}
.multiselect {
padding-bottom: 10px;
padding-top: 10px;
}
.multiselect-clear-filter {
padding-bottom: 5px;
padding-top: 5px;
padding-right: 10px;
padding-left: 10px;
}
circle {
fill-opacity: .7;
fill: rgb(30,144,255);
stroke: #aaa;
}
circle:hover {
fill: red;
stroke: #ccc;
}
#circle-leg-1 {
fill-opacity: .9;
fill: rgb(200,200,200);
stroke: #aaa;
}
#circle-leg-2 {
fill-opacity: .9;
fill: rgb(30,144,255);
stroke: rgb(30,144,255);
}
#circle-leg-3 {
fill-opacity: .9;
fill: rgb(240,20,20);
stroke: rgb(240,20,20);
}
#circle-leg-4 {
fill-opacity: .9;
fill: rgb(0,0,0);
stroke: #aaa;
}
caption {
font-size:medium;
text-align: center;
color: #035b9c;
font-weight:500;
}
path.line {
fill: none;
stroke: #666;
stroke-width: 1.5px;
}
path.area {
fill: #e7e7e7;
}
.axis path,
.axis line {
fill: none;
stroke: black;
shape-rendering: crispEdges;
}
.y.axis line,
.y.axis path {
fill: none;
stroke: #000;
}
.axis--y text {
font: oblique 10px Georgia, serif;
}
.glyphicon + .tooltip > .tooltip-inner {
/*position: absolute;*/
background-color: white;
color: black;
border: 1px solid gray;
padding: 10px;
font-size: 12px;
height:auto;
}
.glyphicon + .tooltip {
background-color: white;
}
.btn + .tooltip.bottom > .tooltip-inner {
position: absolute;
text-align: left;
width: 160px;
height: auto;
padding: 10px;
font: 12px sans-serif;
background: lightsteelblue;
border: 0px;
/* box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4); */
pointer-events: none;
color:black;
}
div.tooltip {
position: absolute;
text-align: left;
width: 200px;
height: auto;
padding: 10px;
font: 12px sans-serif;
background: lightsteelblue;
border: 0px;
border-radius: 8px;
/* box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4); */
pointer-events: none;
color:black;
}
.glyphicon-arrow-down {
font-size: large;
}
.glyphicon-arrow-down:hover {
color: navy;
font-size: x-large;
}
.glyphicon-arrow-up {
font-size: large;
}
.glyphicon-arrow-up:hover {
color: navy;
font-size: x-large;
}
.badge {
background: white;
color: steelblue;
/*font-size: small; */
padding-top: 5px;
padding-bottom: 5px;
}
.navbar-nav:hover {
background: #77b7ec;
}
.navbar-nav>.open {
background: #1974B8;
}
.navbar-nav > li > a:active {
font-size: larger;
}
.navbar-nav > li > a:focus {
font-size: larger;
}
.navbar-inverse .navbar-nav>.open>a, .navbar-inverse .navbar-nav>.open>a:focus, .navbar-inverse .navbar-nav>.open>a:hover {
background: #77b7ec;
}
</style>
</head>
<body role="document" style="background: #eee;">
<nav class="navbar navbar-inverse navbar-fixed-top" style= "margin-botom:0px;">
<div class="container-fluid" style = "background: #1974B8;">
<div id="navbar">
<ul class="nav navbar-nav" style="margin-left:100px;">
<li>
<a href="index.html" style="padding:0px;"> <img src="images/Logo.png" alt="ImmuneRegulation" height="40" style="margin-right: 10px; margin-top:5px;"> </a>
</li>
<li>
<a href="index.html" class="navbar-brand" style="color: white;" role="button" aria-expanded="false">ImmuneRegulation </a>
</li>
</ul>
<ul class="nav navbar-nav">
<li class="dropdown">
<a href="#" class="dropdown-toggle navbar-brand" style="color: white; margin-left: 10px;" data-toggle="dropdown" role="button" aria-expanded="false">Example Queries
<span class="caret"></span></a>
<ul class="dropdown-menu" style="margin-left: 10px; font-size:medium;" role="menu">
<li>
<a id="exQuery1" href="#" onclick="exampleQuery1();">Example 1 - Cis-eQTLs for JAK2 gene in monocyte exposure studies</a>
</li>
<li>
<a id="exQuery2" href="#" onclick="exampleQuery2();">Example 2 - Trans-eQTLs for Cytokine Pathway genes in Whole-blood meta-analysis study</a>
</li>
<li>
<a id="exQuery3" href="#" onclick="exampleQuery3();">Example 3 - Transcription Factor studies with hits for IL15RA gene </a>
</li>
</ul>
</li>
</ul>
<ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="metadata-all.html">Query Meta-data</a>
</a>
</li>
</ul>
<ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="tutorials.html">Tutorials</a>
</a>
</li>
</ul>
<ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="feedback.html">Contact Us</a>
</a>
</li>
</ul>
<ul class="nav navbar-nav">
<li><a class="navbar-brand" style="color: white; margin-left: 10px;" href="faq.html">FAQ</a>
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a href="http://www.mssm.edu" target="_blank" style = "padding-top: 0px; padding-bottom: 0px; margin-left: 10px;">
<img src="images/logo.gif" alt="Mount Sinai" height="40" style = "margin-left: 10px; margin-right: 100px; margin-top:5px; margin-bottom:5px;">
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a class="navbar-brand" target="_blank" style="color: white; margin-left: 10px; margin-right: 30px;" href="https://www.immunespace.org/">ImmuneSpace </a>
</li>
</ul>
</div>
</div>
</nav>
<div class="container" id = "mainContainer" style="background: white; padding-bottom: 50px;"> <!-- container start -->
<div class="row" id="immRegExpRow" style="margin-top: 60px;margin-left:-5px;margin-right:-5px; padding-top:10px;">
<p style="font-size:medium; text-align:center;"><strong> immuneRegulation </strong> provides visualization, exploration, and download of large-number of regulatory data through a single, and intuitive interface.
</p>
</div>
<div class="row" id="geneEntryRow" style="border:1px solid #888888; margin-top: 10px;margin-left:-5px;margin-right:-5px; padding-top:10px;">
<div class="col-md-3" style="font-size:medium;">
<span id="switchQueryText" style=""><strong> Enter </strong>
<span>
<div class="btn-group" role="group" aria-label="...">
<button id="enterGeneInput" onclick="switchQueryInputGene();" type="button" class="btn btn-default active" style="padding-top:12px; padding-bottom:12px;padding-left:8px;padding-right:8px; font-weight:500; border-radius:3px;">Gene(s)</button>
<button id="enterSNPInput" onclick="switchQueryInputSNP();" type="button" class="btn btn-default" style="padding-top:12px; padding-bottom:12px;padding-left:8px;padding-right:8px; font-weight:500; border-radius:3px;">SNP(s)</button>
</div>
</span>
<span><strong> : </strong>
</span>
<!--p style = "margin-top:10px;"> <a style = "margin-left: 60px; padding-top:20 px;" href="metadata-all.html"> Query Meta-data </a></p-->
</div>
<div class="col-md-6" style="font-size:medium;">
<textarea id="geneVal" class="typeahead" placeholder="Enter HUGO Gene symbols" cols="57" rows="4" style="padding-top:0px; margin-bottom:5px; overflow:inherit;overflow-x: hidden;"></textarea>
</div>
<div class="col-md-3" id="extraGene" style="font-size:16px; padding-top:15px; color:red; visibility:hidden;">
<p style=""> Please enter a single gene in the gene-box for 'cis-eQTL' queries. </p>
</div>
</div>
<div class="row" id= "browseRow" style="padding-bottom: 1px; margin-top: 20px; margin-bottom: 20px; margin-right: -7px; margin-left: -7px; padding-bottom: -10px; background: #ddd; border-style: solid; border-width: 1px; border-radius: 1px; border-color: #888888; height:445px; ">
<div class="row" style="background: white; margin:0px; padding-bottom: 0px; border: 1px solid lightgray;">
<div class="col-md-3" style = "font-size:large; padding-top:20px;">
<span style="margin-right:5px;" class="glyphicon glyphicon-list"> </span> <strong> Study List: </strong>
</div>
<div class="col-md-2" style = "font-size:medium; text-align:center; padding-top:20px;">
<p id="studyCountText"> 0 studies selected </p>
</div>
<div class="col-md-2" id="deselectDiv" style = "font-size:medium; text-align:center; padding-top:20px; visibility:hidden;">
<a href="#" onclick = "deselectStudies()"> Deselect all </a>
</div>
<div class="col-md-3" style = "font-size:medium; text-align:right; padding-top:20px; opacity:0.5;">
<p> <strong>Study Type: </strong> </p>
</div>
<div class="col-md-2" style = "font-size:medium; color:#337ab7; text-align:left; padding-top:20px; opacity:0.5;">
<p id="queryType"> Not Selected </p>
</div>
</div>
<div class="row" style="padding:0px; overflow: hidden; height:91%; margin:0px;">
<div class="col-md-3" style="padding:0px; overflow: scroll; height:inherit; background:white;">
<ul class="list-group" style="margin-bottom: 0px; font-size:initial;">
<li class="list-group-item" id="userListMain" style="color:black; background:#a1cce4;">
<span class="badge" id="userListCount">0</span>
<a href="#" onClick = filterUser()> ⇣ User Studies </a>
</li>
<li class="list-group-item" id="userListCis" style="color:black; padding-left:35px;background:#a1cce4;">
<span class="badge" id="userListCisCount">0</span>
<a href="#" onClick = filterCisUser()> ↳ cis-eQTL</a>
</li>
<li class="list-group-item" id="userListTrans" style="color:black; padding-left:35px;background:#a1cce4;">
<span class="badge" id="userListTransCount">0</span>
<a href="#" onClick = filterTransUser()> ↳ trans-eQTL</a>
</li>
<li class="list-group-item" id="listHIPC" style="color:black; background:#a1cce4;">
<span class="badge">33</span>
<a href="#" onClick = filterHIPC()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span--> ⇣ HIPC Studies </a>
</li>
<li class="list-group-item" id="listCisHIPC" style="color:black; padding-left:35px; background:#a1cce4;">
<span class="badge">22</span>
<a href="#" onClick = filterCisHIPC()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span>
<span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span--> ↳ cis-eQTL</a>
</li>
<li class="list-group-item" id="listTransHIPC" style="color:black; padding-left:35px; background:#a1cce4;">
<span class="badge">10</span>
<a href="#" onClick = filterTransHIPC()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span>
<span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span--> ↳ trans-eQTL</a>
</li>
<li class="list-group-item" id="listHLAHIPC" style="color:black; padding-left:35px; background:#a1cce4;">
<span class="badge">1</span>
<a href="#" onClick = filterHLAType()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span>
<span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span--> ↳ HLA Types</a>
</li>
<li class="list-group-item" id="listNonHIPC" style="color:black;background:#a1cce4;">
<span class="badge">87</span>
<a href="#" onClick = filterNonHIPC()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span--> ⇣ Non-HIPC Studies </a>
</li>
<li class="list-group-item" id="listCisNonHIPC" style="color:black; padding-left:35px;background:#a1cce4;">
<span class="badge">69</span>
<a href="#" onClick = filterCisNonHIPC()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-menu-right"> </span>
<span style="margin-right:5px;" class="glyphicon glyphicon-option-horizontal"> </span--> ↳ cis-eQTL</a>
</li>
<li class="list-group-item" id="listTransNonHIPC" style="color:black; padding-left:35px;background:#a1cce4;">
<span class="badge">18</span>
<a href="#" onClick = filterTransNonHIPC()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-menu-right"> </span>
<span style="margin-right:5px;" class="glyphicon glyphicon-option-horizontal"> </span--> ↳ trans-eQTL</a>
</li>
<li class="list-group-item" id="mainTF" style="color:black;background:#a1cce4;">
<span class="badge">1945</span>
<a href="#" onClick = filterTF()>
<!--span style="margin-right:5px;" class="glyphicon glyphicon-option-vertical"> </span--> ⇣ Transcription Factors </a>
</li>
</ul>
</div>
<div class="col-md-9" style="padding-left:0px; overflow: scroll; height:inherit; padding-right:0px; background:white;">
<ul class="list-group" id="allStudies" style="margin-bottom: 0px; font-size:initial; ">
<li class="list-group-item user" id="UserListTitle" style="color:black; padding-top:15px;padding-left:10px;">
<strong>User Studies</strong>
</li>
<li class="list-group-item user ucis" id="UserListCis0" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
<input type="checkbox" class="studyopt Option" id="study101" value="on">
<span value="101" id="span1000">User</span>
</li>
<li class="list-group-item user ucis" id="UserListCis1" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
<input type="checkbox" class="studyopt Option" id="study102" value="on">
<span value="102" id="span1001">User</span>
</li>
<li class="list-group-item user ucis" id="UserListCis2" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
<input type="checkbox" class="studyopt Option" id="study103" value="on">
<span value="103" id="span1002">User</span>
</li>
<li class="list-group-item user utrans" id="UserListTrans0" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
<input type="checkbox" class="studyopt Option" id="study111" value="on">
<span value="111" id="span1100">User</span>
</li>
<li class="list-group-item user utrans" id="UserListTrans1" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
<input type="checkbox" class="studyopt Option" id="study112" value="on">
<span value="112" id="span1101">User</span>
</li>
<li class="list-group-item user utrans" id="UserListTrans2" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
<input type="checkbox" class="studyopt Option" id="study113" value="on">
<span value="113" id="span1102">User</span>
</li>
<li class="list-group-item user" id="UserListCis" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
</li>
<li class="list-group-item non-hipc" style="color:black; padding-top:15px;padding-bottom:5px;padding-left:10px;">
<strong>Non-HIPC Studies</strong>
</li>
<li class="list-group-item non-hipc" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px; border-bottom:0px;">
<strong>Whole Blood</strong>
</li>
<li class="list-group-item non-hipc" style="color:black;padding-top:5px;padding-bottom:5px;padding-left:30px;border-bottom:0px;border-top:0px;">
<input type="checkbox" class="studyopt Option" id="framingham" value="on">
<span value="11">Whole Blood - European American (Framingham Heart Study, NHLBI)</span>
<span style = "float:right;"> <span style = "color:gray; font-size:smaller;"> 5257 samples </span>
<span class="glyphicon glyphicon-info-sign" aria-hidden="true" data-toggle="tooltip" title="Framingham Heart Study, under the direction of the National Heart, Lung and Blood Institute (NHLBI), formerly known as the National Heart Institute, has been committed to identifying the common factors or characteristics that contribute to cardiovascular disease (CVD). Study began in 1948 by recruiting an Original Cohort of 5,209 men and women between the ages of 30 and 62 from the town of Framingham, Massachusetts, who had not yet developed overt symptoms of cardiovascular disease or suffered a heart attack or stroke."></span>
<a href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1142-6" target="_blank"> <span class="glyphicon glyphicon-book" aria-hidden="true"></span></span> </a>
</li>
<li class="list-group-item non-hipc cis" style="color:black;padding-top:5px;padding-bottom:5px;border-bottom:0px;padding-left:30px;border-top:0px;">