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supplying fit parameters file no longer finds fmin
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bin/singleClusterFits.py

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -172,11 +172,11 @@ def bindingSeriesByCluster(concentrations, bindingSeries,
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if fitParameters is None:
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fitParameters = getInitialFitParameters(concentrations)
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175-
# change fmin initial
176-
initial_fluorescence = bindingSeries.sort([0]).dropna().iloc[::100, 0]
177-
print "Fitting fmin initial..."
178-
fitParameters.loc['initial', 'fmin'] = findFmaxDist.fitGammaDistribution(
179-
initial_fluorescence, plot=True, set_offset=0).loc['mean']
175+
# change fmin initial
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initial_fluorescence = bindingSeries.sort([0]).dropna().iloc[::100, 0]
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print "Fitting fmin initial..."
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fitParameters.loc['initial', 'fmin'] = findFmaxDist.fitGammaDistribution(
179+
initial_fluorescence, plot=True, set_offset=0).loc['mean']
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# sort by fluorescence in null_column to try to get groups of equal
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# distributions of binders/nonbinders

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